View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18886_low_13 (Length: 285)
Name: NF18886_low_13
Description: NF18886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18886_low_13 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 43831922 - 43831655
Alignment:
| Q |
18 |
ggtattgctaacaaggcatgtcaaatgggtcggtctgatccaaggaagattatatttgctgcaaaaatgggtcttgctttgactattatctcccttttga |
117 |
Q |
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| T |
43831922 |
ggtattgctaacaaggcatgtcaaatgggtcggtctgatccaaggaagattatatttgccgcaaaaatgggtcttgctttgactattatctcccttttga |
43831823 |
T |
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| Q |
118 |
tttttctcaaagaacccttcaacaaagatattggtcgtaactctgtttgggctattctcaccgttgtagtagtctttgaattcagtataggtacgtagtc |
217 |
Q |
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| T |
43831822 |
tttttctcaaagaacccttcaacaaagatattggtcgtaactctgtttgggctattctcaccgttgtagttgtctttgaattcagtataggtacgtagtc |
43831723 |
T |
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| Q |
218 |
annnnnnncatttattatgcaagagtaatatttgcgcttttttcaacttacaaaatagaaataagtta |
285 |
Q |
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| T |
43831722 |
atatttttcatttattatgcaagagtaatatttacgtttttttcaacttacaaaatagaaataagtta |
43831655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 40 - 214
Target Start/End: Complemental strand, 43816996 - 43816822
Alignment:
| Q |
40 |
aaatgggtcggtctgatccaaggaagattatatttgctgcaaaaatgggtcttgctttgactattatctcccttttgatttttctcaaagaacccttcaa |
139 |
Q |
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| T |
43816996 |
aaatgggtcgttctgatccaagaaagatcatttttgctgctaaaatgggtcttgctttgactattatctcccttttgattttccttaaagaacccttcaa |
43816897 |
T |
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| Q |
140 |
caaagatattggtcgtaactctgtttgggctattctcaccgttgtagtagtctttgaattcagtataggtacgta |
214 |
Q |
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| T |
43816896 |
aaatgatattagccgtcactctgtttgggctattctaactgttgtcgtagtctttgaattcagtataggtacgta |
43816822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 40 - 213
Target Start/End: Complemental strand, 43824932 - 43824765
Alignment:
| Q |
40 |
aaatgggtcggtctgatccaaggaagattatatttgctgcaaaaatgggtcttgctttgactattatctcccttttgatttttctcaaagaacccttcaa |
139 |
Q |
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| T |
43824932 |
aaatgggtcgttctgatccaaggaagatcattttcgctgctaaaatgggtcttgctttggcccttatctcccttttgatttttcttaaagaacccttc-- |
43824835 |
T |
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| Q |
140 |
caaagatattggtcgtaactctgtttgggctattctcaccgttgtagtagtctttgaattcagtataggtacgt |
213 |
Q |
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| T |
43824834 |
----gattttacccgtcattctgtttgggctattctcaccgtcgtcgtcgtctttgaattcagtataggtacgt |
43824765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 31805414 - 31805467
Alignment:
| Q |
157 |
actctgtttgggctattctcaccgttgtagtagtctttgaattcagtataggta |
210 |
Q |
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| T |
31805414 |
actctgtttgggctattcttactgttgttgtcgtctttgagttcagtataggta |
31805467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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