View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18886_low_16 (Length: 272)
Name: NF18886_low_16
Description: NF18886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18886_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 40628459 - 40628203
Alignment:
| Q |
18 |
agttaggtgtaataactccttgatgggtacaata-----caactttcgaaactctatataaggatatgcaattgccctaatccaaattaacactttcaag |
112 |
Q |
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| T |
40628459 |
agttaggtgtaataactccttgatgggtacaatataatacaacttttgaaactctatataaggatatgcaattgccctaatccaaattaacactttcaag |
40628360 |
T |
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| Q |
113 |
caaacaaaaacaatccactctctctgttctaatctcgatggctcgcatatcaaatcttatttttctagcttgcattttccttttcaatattataaacatt |
212 |
Q |
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| T |
40628359 |
caaacaaaaacaatccactctctctgttctaatctcgatggctcgcatatcaaatcttatttttctagcttgcattttccttttcaatattataaacatt |
40628260 |
T |
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| Q |
213 |
ccattcctcacaaatgctatttcctcatgcaatggaccatgcaacactctcaatgat |
269 |
Q |
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| T |
40628259 |
ccattcctcacaaatgctatttcctcatgcaatggaccatgcaacactctcaatgat |
40628203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 139 - 265
Target Start/End: Original strand, 40640879 - 40641005
Alignment:
| Q |
139 |
ttctaatctcgatggctcgcatatcaaatcttatttttctagcttgcattttccttttcaatattataaacattccattcctcacaaatgctatttcctc |
238 |
Q |
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| T |
40640879 |
ttctaatctcaatggctcacgtttcaaatcttgtttttttagcttccattttccttttcaacatcataaacattccattccttacaaatgttatttcctc |
40640978 |
T |
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| Q |
239 |
atgcaatggaccatgcaacactctcaa |
265 |
Q |
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| T |
40640979 |
atgcaacggaccttgtaaaactctcaa |
40641005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 257
Target Start/End: Complemental strand, 40611145 - 40611006
Alignment:
| Q |
118 |
aaaaacaatccactctctctgttctaatctcgatggctcgcatatcaaatcttatttttctagcttgcattttccttttcaatattataaacattccatt |
217 |
Q |
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| T |
40611145 |
aaaaaccacccactctctctactatactctcaatgactctcatatcaaatcttgtttttctagcttccattttccttttcaacattacaaaccttccttt |
40611046 |
T |
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| Q |
218 |
cctcacaaatgctatttcctcatgcaatggaccatgcaac |
257 |
Q |
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| T |
40611045 |
cctcaccaacgctatttcttcatgcaacggaggatgcaac |
40611006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 40617768 - 40617650
Alignment:
| Q |
132 |
ctctctgttctaatctcgatggctcgcatatcaaatcttatttttctagcttgcattttccttttcaatattataaacattccattcctcacaaatgcta |
231 |
Q |
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|||||| |||||||||| ||||||| |||||||||||| ||||| |||||| ||||||| |||| || || |||||| |||||||||||| |||||| |
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| T |
40617768 |
ctctctattctaatctcaatggctcagatatcaaatcttgtttttttagcttccattttcttttttaacatcataaacggtccattcctcacggatgcta |
40617669 |
T |
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| Q |
232 |
tttcctcatgcaatggacc |
250 |
Q |
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||||||||||||| ||||| |
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| T |
40617668 |
tttcctcatgcaacggacc |
40617650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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