View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18886_low_21 (Length: 260)
Name: NF18886_low_21
Description: NF18886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18886_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 41589284 - 41589109
Alignment:
| Q |
17 |
aaagggttgtaattgtagttgtatgagtctataattggatcaagttcaaaggagctagtgctatcactgcttaaactataatcactgaagttagggctat |
116 |
Q |
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| T |
41589284 |
aaagggttgtaattgtagttgtatgagtctataattggatcaagttcaaaggagctagtgctatcactgcttaaactataatcactgaagttagggctat |
41589185 |
T |
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| Q |
117 |
ccacaaagttgtagttttgttgatactcatgctggatggaagaagaaggaagagtagtagtaatagcagtaacagcagt |
195 |
Q |
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| T |
41589184 |
ccacaaagttgtagttttgttgatactcatgctggatggaa---gaaggaagagtagtagtaatagcagtaacagcagt |
41589109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 41556639 - 41556520
Alignment:
| Q |
17 |
aaagggttgtaattgtagttgtatgagtctataattggatcaagttcaaaggagctagtgctatcactgcttaaactataatcactgaagttagggctat |
116 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
41556639 |
aaagggttgttattatagttgtatgagtctataattggatcaggttcaaaggagctagtgctgccactgctgaaactataatcactgaagttagggctat |
41556540 |
T |
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| Q |
117 |
ccacaaagttgtagttttgt |
136 |
Q |
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|||| |||||||||||||| |
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| T |
41556539 |
gcacatagttgtagttttgt |
41556520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 41570352 - 41570240
Alignment:
| Q |
22 |
gttgtaattgtagttgtatgagtctataattggatcaagttcaaaggagctagtgctatcactgcttaaactataatcactgaagttagggctatccaca |
121 |
Q |
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| T |
41570352 |
gttgtaattgtagttgtatgtctctataattggttcaagttcaaaggagctagtgctaccactgctgaaactataatcactgatgtcagggctatgcaca |
41570253 |
T |
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| Q |
122 |
aagttgtagtttt |
134 |
Q |
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|| |||||||||| |
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| T |
41570252 |
aatttgtagtttt |
41570240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 41579251 - 41579173
Alignment:
| Q |
47 |
ataattggatcaagttcaaaggagctagtgctatcactgcttaaactataatcactgaagttagggctatccacaaagt |
125 |
Q |
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| T |
41579251 |
ataattggatcaagttcaaagtagctagtcctaccactgctgaaactataatcactgaagttagggctatgcacaaagt |
41579173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 47
Target Start/End: Complemental strand, 41582755 - 41582725
Alignment:
| Q |
17 |
aaagggttgtaattgtagttgtatgagtcta |
47 |
Q |
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| T |
41582755 |
aaagggttgtaattgtagttgtatgagtcta |
41582725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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