View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18886_low_23 (Length: 252)
Name: NF18886_low_23
Description: NF18886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18886_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 40628118 - 40627884
Alignment:
| Q |
1 |
tcaccaccaagcggcggtggtggcggcacttgccaatcctccggcaccttacagtgcnnnnnnnn-tcataccctcaatataggtgttctccaccagttt |
99 |
Q |
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| T |
40628118 |
tcaccaccaagtggcggtggtggcggcacttgccaatcctccggcaccttacagtgcaaaaaaaaatcataccctcaatataggtgttctccaccagttt |
40628019 |
T |
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| Q |
100 |
catcctctacacaagcatcactcacgctcaacgatttcagcgagggtggagacggaggaggtccgtctcaatgcgatgaaaaataccacgacaactcgga |
199 |
Q |
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| T |
40628018 |
catcctctacacaagcatcactcacgctcaacgatttcagcgagggtggagacggaggaggtccgtctcaatgcgatgaaaaataccacgacaactcgga |
40627919 |
T |
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| Q |
200 |
aagagtggtggctttgtccactgggtggtacaacg |
234 |
Q |
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| T |
40627918 |
aagagtggtggctttgtccactgggtggtacaacg |
40627884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 234
Target Start/End: Original strand, 40641151 - 40641319
Alignment:
| Q |
66 |
tcataccctcaatataggtgttctccaccagtttcatcctctacacaagcatcactcacgctcaacgatttcagcgagggtggagacggaggaggtccgt |
165 |
Q |
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| T |
40641151 |
tcattccctcaattcaagtgctctccaccagtctcatcttccacacaagcattactcacgttgaatgatttcagcgagggtggagacgaaggagctccat |
40641250 |
T |
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| Q |
166 |
ctcaatgcgatgaaaaataccacgacaactcggaaagagtggtggctttgtccactgggtggtacaacg |
234 |
Q |
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| T |
40641251 |
cacagtgcgacgaacagttccatagctactcagaaagagtagtggcgctgtccactgggtggtacaacg |
40641319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 40610842 - 40610746
Alignment:
| Q |
70 |
accctcaatataggtgttctccaccagtttcatcctctacacaagcatcactcacgctcaacgatttcagcgagggtggagacggaggaggtccgtc |
166 |
Q |
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|||||||||| ||| ||||||| |||||||||||| |||||||||| ||||||| || |||||||| || || ||| |||||||||||||| |
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| T |
40610842 |
accctcaataccagtgctctccacgagtttcatcctccacacaagcattactcacgtggaatgatttcagtgaaggaggaagtggaggaggtccgtc |
40610746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 94
Target Start/End: Complemental strand, 40617477 - 40617449
Alignment:
| Q |
66 |
tcataccctcaatataggtgttctccacc |
94 |
Q |
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| T |
40617477 |
tcataccctcaatataggtgttctccacc |
40617449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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