View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18886_low_27 (Length: 234)

Name: NF18886_low_27
Description: NF18886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18886_low_27
NF18886_low_27
[»] chr1 (4 HSPs)
chr1 (107-234)||(37453851-37453980)
chr1 (4-110)||(37454042-37454149)
chr1 (15-110)||(35848498-35848594)
chr1 (18-111)||(38965400-38965494)
[»] chr2 (4 HSPs)
chr2 (15-110)||(14871726-14871822)
chr2 (28-110)||(14876804-14876887)
chr2 (18-110)||(44996633-44996726)
chr2 (15-52)||(14876895-14876932)
[»] chr8 (5 HSPs)
chr8 (12-108)||(999144-999241)
chr8 (15-110)||(1248339-1248435)
chr8 (15-99)||(11584195-11584279)
chr8 (19-79)||(43420783-43420843)
chr8 (15-79)||(43421969-43422033)
[»] chr3 (3 HSPs)
chr3 (19-108)||(23378086-23378176)
chr3 (21-110)||(5393727-5393817)
chr3 (15-110)||(48309931-48310028)
[»] chr5 (2 HSPs)
chr5 (15-110)||(40584095-40584191)
chr5 (19-59)||(14323421-14323461)
[»] chr4 (1 HSPs)
chr4 (5-110)||(8810659-8810765)
[»] scaffold0003 (1 HSPs)
scaffold0003 (15-99)||(324142-324227)
[»] chr7 (3 HSPs)
chr7 (15-99)||(24680856-24680941)
chr7 (18-110)||(2230461-2230554)
chr7 (15-110)||(5068514-5068610)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 107 - 234
Target Start/End: Complemental strand, 37453980 - 37453851
Alignment:
Q  107 aataattgtataaatatcatttttcnnnnnnnngtctagtaatagtcgtga--gaattatcaacttaaaattctttattgactcaaaaacagtttaaggt 204  Q
    ||||||| |||||||||||||| ||        |||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  37453980 aataattatataaatatcatttctcaaaaaaaagtctagtaatagtcatgactgaattatcaacttaaaattctttattgactcaaaaacagtttaaggt 37453881  T
Q  205 gagaataatatccaaatacaaagacgtgac 234  Q
     |||||||||||||||||||||||||||||    
T  37453880 aagaataatatccaaatacaaagacgtgac 37453851  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 37454149 - 37454042
Alignment:
Q  4 gaaaagaaaaggaggtatgttatttgaacaactattttttgtacaacttataggactattaaaaatatagaa-aaaatgtatgtcttgacacgaaaatta 102  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||| | ||||||||||||| ||||||||||| ||||||||||||| |    
T  37454149 gaaaagaaaaggaggtatgttatttgaacaactactttttgtacaacttatgggacaactaaaaatatagaaaaaaatgtatgttttgacacgaaaatca 37454050  T
Q  103 aagcaata 110  Q
    ||||||||    
T  37454049 aagcaata 37454042  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 35848594 - 35848498
Alignment:
Q  15 gaggtatgttatttgaacaactattttttgtacaacttataggactattaaaaatatagaaa-aaatgtatgtcttgacacgaaaattaaagcaata 110  Q
    ||||||||||||||||||||| | |||||||||||||||| |||| |  || |||||||||| |||||||||||||||||||||||| ||| |||||    
T  35848594 gaggtatgttatttgaacaaccactttttgtacaacttatgggacaaccaagaatatagaaagaaatgtatgtcttgacacgaaaatcaaaacaata 35848498  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 38965400 - 38965494
Alignment:
Q  18 gtatgttatttgaacaactattttttgtacaacttataggactattaaaaatatagaaa-aaatgtatgtcttgacacgaaaattaaagcaataa 111  Q
    |||||||||||||||||| | ||| ||||||| |||||| || |  ||||||||||||| |||||||| | ||||||||||||||||| ||||||    
T  38965400 gtatgttatttgaacaaccactttatgtacaatttatagaacaacaaaaaatatagaaagaaatgtatctattgacacgaaaattaaaacaataa 38965494  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 14871822 - 14871726
Alignment:
Q  15 gaggtatgttatttgaacaactattttttgtacaacttataggactattaaaaatatagaaa-aaatgtatgtcttgacacgaaaattaaagcaata 110  Q
    ||||||||||||||||||||||| |||||||||||||||| |||| | |||||||||||||| |||||||||||||||||| ||||| |||||||||    
T  14871822 gaggtatgttatttgaacaactactttttgtacaacttatgggacaactaaaaatatagaaagaaatgtatgtcttgacacaaaaatcaaagcaata 14871726  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 14876887 - 14876804
Alignment:
Q  28 tgaacaactattttttgtacaacttataggactattaaaaatatagaaa-aaatgtatgtcttgacacgaaaattaaagcaata 110  Q
    ||||||| || |||||||||||||||| |||| | |||||||||||||| |||||| ||||||||||| ||||| ||| |||||    
T  14876887 tgaacaagtactttttgtacaacttatgggacaactaaaaatatagaaagaaatgtgtgtcttgacacaaaaatcaaaacaata 14876804  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 44996726 - 44996633
Alignment:
Q  18 gtatgttatttgaacaactattttttgtacaacttataggactattaaaaatatagaaa-aaatgtatgtcttgacacgaaaattaaagcaata 110  Q
    |||| ||||||||||||| ||||||| || || |||| |||| || || |||||||||| |||||||||||||||||| ||||  |||||||||    
T  44996726 gtatattatttgaacaaccattttttatataatttatgggacaatcaagaatatagaaagaaatgtatgtcttgacacaaaaaccaaagcaata 44996633  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 14876932 - 14876895
Alignment:
Q  15 gaggtatgttatttgaacaactattttttgtacaactt 52  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  14876932 gaggtatgttatttgaacaactactttttgtacaactt 14876895  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 999144 - 999241
Alignment:
Q  12 aaggaggtatgttatttgaacaactattttttgtacaacttataggactattaaaaatatagaaa-aaatgtatgtcttgacacgaaaattaaagcaa 108  Q
    |||||||||||||||||||||||| | ||||| ||||||||||  ||| |  || |||||||||| |||||||||||||||||||||||| |||||||    
T  999144 aaggaggtatgttatttgaacaaccactttttatacaacttattagacaaccaagaatatagaaagaaatgtatgtcttgacacgaaaatcaaagcaa 999241  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 1248435 - 1248339
Alignment:
Q  15 gaggtatgttatttgaacaactattttttgtacaacttataggactattaaaaatatagaaa-aaatgtatgtcttgacacgaaaattaaagcaata 110  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||| |  || |||||||||| |||||||||||||   |||||||| |||||||||    
T  1248435 gaggtatgttatttgaacaactattttttgtacaatttatgagacaaacaagaatatagaaagaaatgtatgtcttagtacgaaaatcaaagcaata 1248339  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 11584279 - 11584195
Alignment:
Q  15 gaggtatgttatttgaacaactattttttgtacaacttataggactattaaaaatatagaaa-aaatgtatgtcttgacacgaaaa 99  Q
    ||||||||||||||||||| | | |||||||||||||||| |||| || || |||||||||| |||||||||| ||||||||||||    
T  11584279 gaggtatgttatttgaacacc-actttttgtacaacttatgggacaatcaagaatatagaaagaaatgtatgttttgacacgaaaa 11584195  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 43420783 - 43420843
Alignment:
Q  19 tatgttatttgaacaactattttttgtacaacttataggactattaaaaatatagaaaaaa 79  Q
    ||||||||||||||||| | ||||||||||| ||||  ||| || || |||||||||||||    
T  43420783 tatgttatttgaacaaccactttttgtacaatttatgagacaatcaataatatagaaaaaa 43420843  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 43422033 - 43421969
Alignment:
Q  15 gaggtatgttatttgaacaactattttttgtacaacttataggactattaaaaatatagaaaaaa 79  Q
    ||||||||||||||||||||| | |||||||| || |||| |||| |  || |||||||||||||    
T  43422033 gaggtatgttatttgaacaaccactttttgtataatttatgggacaaccaataatatagaaaaaa 43421969  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 23378176 - 23378086
Alignment:
Q  19 tatgttatttgaacaactattttttgtacaacttataggactattaaaaatatagaaa-aaatgtatgtcttgacacgaaaattaaagcaa 108  Q
    ||||||||||||||||| | |||||||||||||||| |||| | ||| |||||||||| |||| ||| ||||||||||||||| |||||||    
T  23378176 tatgttatttgaacaaccactttttgtacaacttatgggacaactaagaatatagaaagaaatatatatcttgacacgaaaatcaaagcaa 23378086  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 5393727 - 5393817
Alignment:
Q  21 tgttatttgaacaactattttttgtacaacttataggactattaaaaatatagaaa-aaatgtatgtcttgacacgaaaattaaagcaata 110  Q
    ||||||||||||||| | |||||||||||||||| | || |  || |||||||||| |||||||||||||||||||||||  |||||||||    
T  5393727 tgttatttgaacaaccactttttgtacaacttatggtacaaccaagaatatagaaagaaatgtatgtcttgacacgaaaaccaaagcaata 5393817  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 110
Target Start/End: Complemental strand, 48310028 - 48309931
Alignment:
Q  15 gaggtatgttatttgaacaactattttttgtacaacttataggactat-taaaaatatagaaa-aaatgtatgtcttgacacgaaaattaaagcaata 110  Q
    |||||||||||||| |||||| | |||||| | || |||| |||| |  ||| |||||| ||| ||||||||||||||||||||||| |||| |||||    
T  48310028 gaggtatgttattttaacaaccactttttgcataatttatgggaccaactaagaatataaaaagaaatgtatgtcttgacacgaaaactaaaacaata 48309931  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 40584095 - 40584191
Alignment:
Q  15 gaggtatgttatttgaacaactattttttgtacaacttataggactattaaaaatatagaaa-aaatgtatgtcttgacacgaaaattaaagcaata 110  Q
    ||||||||||||||||||||  | ||||||||||| |||| |||| |  || |||||||||| |||||||||||| ||||||||||| |||||||||    
T  40584095 gaggtatgttatttgaacaatcactttttgtacaatttatgggacaaccaagaatatagaaagaaatgtatgtctagacacgaaaatcaaagcaata 40584191  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 14323421 - 14323461
Alignment:
Q  19 tatgttatttgaacaactattttttgtacaacttataggac 59  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  14323421 tatgttatttgaacaactattttttggacaacttataggac 14323461  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 110
Target Start/End: Complemental strand, 8810765 - 8810659
Alignment:
Q  5 aaaagaaaaggaggtatgttatttgaacaactattttttgtacaacttataggactattaaaaatatagaaa-aaatgtatgtcttgacacgaaaattaa 103  Q
    |||| |||| ||| ||||||||||||||||| | ||||||||||||||||  ||| |  || |||||||||| |||||||| ||||||||||||||| ||    
T  8810765 aaaaaaaaaagagatatgttatttgaacaaccactttttgtacaacttatgagacaaccaagaatatagaaagaaatgtatatcttgacacgaaaatcaa 8810666  T
Q  104 agcaata 110  Q
    | |||||    
T  8810665 aacaata 8810659  T

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Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 324227 - 324142
Alignment:
Q  15 gaggtatgttatttgaacaactattttttgtacaacttataggactattaaaaatatagaaa-aaatgtatgtcttgacacgaaaa 99  Q
    ||||||| ||||||||||||| | |||||||| || |||| |||| | |||||||||||||| |||||||| |||| |||||||||    
T  324227 gaggtatattatttgaacaaccactttttgtataatttatgggacaactaaaaatatagaaagaaatgtatctcttaacacgaaaa 324142  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 24680856 - 24680941
Alignment:
Q  15 gaggtatgttatttgaacaactattttttgtacaacttataggactattaaaaatatagaaa-aaatgtatgtcttgacacgaaaa 99  Q
    ||||||||||||||||||||| | |||||  | |||||||  ||| |  ||||||||||||| |||||||||||||||||||||||    
T  24680856 gaggtatgttatttgaacaaccactttttagataacttatgagacaacaaaaaatatagaaagaaatgtatgtcttgacacgaaaa 24680941  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 2230554 - 2230461
Alignment:
Q  18 gtatgttatttgaacaactattttttgtacaacttataggactattaaaaatatagaaa-aaatgtatgtcttgacacgaaaattaaagcaata 110  Q
    |||||||||||||| ||  |||||||| |||||||||| ||  || ||| ||||| ||| ||||||| || |||  ||||||||||||||||||    
T  2230554 gtatgttatttgaataatcattttttgaacaacttatatgataatcaaatatatacaaagaaatgtaggtattgttacgaaaattaaagcaata 2230461  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 5068514 - 5068610
Alignment:
Q  15 gaggtatgttatttgaacaactattttttgtacaacttataggactattaaaaatatagaaa-aaatgtatgtcttgacacgaaaattaaagcaata 110  Q
    |||| |||||||||||||||| | |||||||| |||||||| ||| |  |  |||||||||| |||||| ||| ||||||| ||||| |||| ||||    
T  5068514 gaggaatgttatttgaacaaccactttttgtataacttataagacaaccatgaatatagaaagaaatgtttgtattgacacaaaaatcaaagtaata 5068610  T

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