View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18886_low_9 (Length: 386)
Name: NF18886_low_9
Description: NF18886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18886_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 43141944 - 43142298
Alignment:
| Q |
17 |
gatgaagcatgttttggctacaaaatattagatttgcatgtattttcttggtttacnnnnnnnncccacattaatattgtgcatacatgatgtagtcaat |
116 |
Q |
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| T |
43141944 |
gatgaagcatgttttggctacaaaatattagatttgcatgtattttcttggtttacttttttttcccacattaatattgtgcatacatgatgtaatcaat |
43142043 |
T |
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| Q |
117 |
tacatgttcacattgtttattatcactagtagtgtgatcataactcataagttcagttgacgtacagttta--gctcttttatgtatgcttattcttaaa |
214 |
Q |
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| T |
43142044 |
tacatgttcacattgtttattatcactagtagtgtgatcataactcataagttcagttgacgtacagtttatagctcttttatgtatgcttattcttaaa |
43142143 |
T |
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| Q |
215 |
ggatatacaagaaattggaattacatcttggtactatctgtgtgtagtgaattagaaagctcggtgtaaagttttggaaaatgtttagtgtacaccaaag |
314 |
Q |
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| T |
43142144 |
ggatatacaagaaattggaattacatcttggtactatctgtgtgtagtgaattagaaagctcggtgtaaagttttggaaaatgtttagtgtacaccaaag |
43142243 |
T |
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| Q |
315 |
agaaaacgaaagaaaaagagagtggtctaataatattgtacatcatcacatatct |
369 |
Q |
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| T |
43142244 |
agaaaacgaaagaaaaagagagtggtctaataatgttgtacctcatcacatatct |
43142298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 291
Target Start/End: Complemental strand, 4132986 - 4132910
Alignment:
| Q |
215 |
ggatatacaagaaattggaattacatcttggtactatctgtgtgtagtgaattagaaagctcggtgtaaagttttgg |
291 |
Q |
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| T |
4132986 |
ggatatacaagaaattggaaatgcatcttggtgttatctgtgtggagtgtaattcaaaggtcgctataaagttttgg |
4132910 |
T |
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