View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18887_high_17 (Length: 347)
Name: NF18887_high_17
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 12032812 - 12033037
Alignment:
| Q |
16 |
ttctatgcacaacataaactaaacatgtacacctctctctacttggattcaaacattgtaagaatcgattttaaatatttataaatgttagtttttaata |
115 |
Q |
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| T |
12032812 |
ttctatgcacaacataaactaaacatgtacacctctctctacttggattcaaacattgtaagaatcgattttaaatatttataaatgttagttgttaata |
12032911 |
T |
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| Q |
116 |
tgttattacatcgactagagtttaaatcttaaacttttttgaagtctcttgaaatgtctcatctcaaatacttgattcaactattttagctacgttttga |
215 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12032912 |
tgtta---catcgactagagtttaaatcttaaacatttttgaagtctcttgaaatgtctcatctcaaatacttgattcaactattttagctacgttttga |
12033008 |
T |
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| Q |
216 |
atattactgatcgattatctctatgggtt |
244 |
Q |
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| T |
12033009 |
agattactgatcgattctctctatgggtt |
12033037 |
T |
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