View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18887_high_19 (Length: 304)
Name: NF18887_high_19
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 13393207 - 13393495
Alignment:
| Q |
1 |
tttatgttaatatacctgtgattaaaataactgaattaactgaaagacacactcaactttgtgagtgagtgaaagtgtcatcatgtacacgtgtttgctt |
100 |
Q |
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| T |
13393207 |
tttatgttaatatacttgtgagtaaaataactgaattaactgaaagacacactcaactttgtga----gtgaaagtgtcatcatgtacacgtgtttgctt |
13393302 |
T |
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| Q |
101 |
tgtcataaaactttagcactatctttttcttcatcactcataagtcataaacttatggtgctaattaacaatagctcttgtgttacaacttagtattaaa |
200 |
Q |
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| T |
13393303 |
tgtcataaaacattagcactatctttttcttcatcactcataagtcataaacttatggtgctaattaacaatagctcttgtgttacaacttagtataaaa |
13393402 |
T |
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| Q |
201 |
tctcaaacagtaggaatctttggcctttaagcaacctttgctccaagcaattctagaatagaactcttctttctttttcatattcatattcat |
293 |
Q |
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| T |
13393403 |
tctcaaacagtaggaatctttggcctttaagcaacctttgctccaagcaattctagaatagaactcttctttctttttcatattcatattcat |
13393495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 13396208 - 13396333
Alignment:
| Q |
20 |
gattaaaataactgaattaactgaaagacacactcaactttgtgagtgagtgaaagtgtcatcatgtacacgtgtttgctttgtcataaaactttagcac |
119 |
Q |
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| T |
13396208 |
gattagaaaaacagaattaattgaaaggcacactcaactttatgagtga---aaagtt--ataatgtaaacgtatttgctttgtcataaaacattggcac |
13396302 |
T |
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| Q |
120 |
tatctttttcttcatcactcataagtcataa |
150 |
Q |
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| T |
13396303 |
tatctttttcttcatcactcataagtcataa |
13396333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 258
Target Start/End: Original strand, 13396349 - 13396453
Alignment:
| Q |
152 |
cttatggtgctaattaacaatagctcttgtgttacaacttagtattaaatctcaaacagtaggaatctttggcctttaagcaacctttgctccaagcaat |
251 |
Q |
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|||||||||||||||||||||| | |||||| || || ||||| | | ||| || || ||||||||||||||| ||||||||||||||||||||||| |
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| T |
13396349 |
cttatggtgctaattaacaatatcccttgtggtattcct-agtatagattttcacacggttggaatctttggcctt-aagcaacctttgctccaagcaat |
13396446 |
T |
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| Q |
252 |
tctagaa |
258 |
Q |
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|| |||| |
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| T |
13396447 |
tcaagaa |
13396453 |
T |
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