View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18887_high_20 (Length: 292)
Name: NF18887_high_20
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 40863057 - 40863312
Alignment:
| Q |
18 |
catgcaatggattgaaatctgaaaaaataatagcctcttcacatagtaatttgaaattatatcttggttatgatctttccactgaaacttgtaagctggt |
117 |
Q |
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| T |
40863057 |
catgcaatggattgaaat-tgaaaaaataatagcctcttcacatagtaatttgaaattatatcttggttatgatctttccactgaaacttgtaagctggt |
40863155 |
T |
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| Q |
118 |
agcattcggtgtggagttggacggtaggaaa---aatgcaacaagcaagtgtggtgtaagttttcagtttcggggataatatattcaacacttacccgtg |
214 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40863156 |
agcattcggtgtggagttggacggtaggaaaaataatgcaacaagcaagtgtggtgaaagttttcagtttcggggataatatattcaacacttactcgtg |
40863255 |
T |
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| Q |
215 |
tctctactttttaggcttaattatgttcgcaacaatggtgtttattttagtgatact |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40863256 |
tctctactttttaggcttaattatgttcgcaacaatggtgtttattttagtggtact |
40863312 |
T |
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