View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18887_high_21 (Length: 282)
Name: NF18887_high_21
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 40482585 - 40482834
Alignment:
| Q |
19 |
acttacataccacctatgaagcactaacataaacacataataaccgataataatttaagaaaatacaagtgattaaatgtgtggatatttgtgttggaca |
118 |
Q |
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| T |
40482585 |
acttacataccacctatgaagcactaacataaacacataata-ccgataataatttaagaaaatacaagtgattaaatttgtggatattggtgttggaca |
40482683 |
T |
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| Q |
119 |
ctaatacgtatgagacacgtcttcactctaaagtctcggtgctatcaataatattagttagatgattagatgggaagttatctttggtaacttagttgca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40482684 |
ctaatacgtatgagacacgtcttcactctaaagtctcggtgctatcaataatattagttagatgattagatgggaagttatcttttgtaacttagttgca |
40482783 |
T |
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| Q |
219 |
caagaattatcctattttactttctttttctttacatgttcactctctgct |
269 |
Q |
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| T |
40482784 |
caagaattatcctattttactttctttttctttacatgttcactctctgct |
40482834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 31652442 - 31652488
Alignment:
| Q |
52 |
cacataataaccgataataatttaagaaaatacaagtgattaaatgt |
98 |
Q |
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| T |
31652442 |
cacatagtcaccgataataatttaagaaaatagaagtgattgaatgt |
31652488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 32931545 - 32931512
Alignment:
| Q |
63 |
cgataataatttaagaaaatacaagtgattaaat |
96 |
Q |
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| T |
32931545 |
cgataataatttaagaaaatagaagtgattaaat |
32931512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 31244018 - 31244050
Alignment:
| Q |
66 |
taataatttaagaaaatacaagtgattaaatgt |
98 |
Q |
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| T |
31244018 |
taataatttaagaaaatataagtgattaaatgt |
31244050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 13398353 - 13398385
Alignment:
| Q |
66 |
taataatttaagaaaatacaagtgattaaatgt |
98 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
13398353 |
taataatttaagaaaatagaagtgattaaatgt |
13398385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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