View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18887_high_22 (Length: 272)
Name: NF18887_high_22
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 23845209 - 23845476
Alignment:
| Q |
1 |
ttgagtacatggaagacttaagtcaaacaccaaaatggattttcctcaagggagctgtggaggaacatgctagaagtggagtcgaagaagaataagcaag |
100 |
Q |
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| T |
23845209 |
ttgagtacgtggaagacttaagtcaaacaccaaaatggattttcctcaagggagctgtgaaggaacatgctagaagtggagtcgaagaagaataagcaag |
23845308 |
T |
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| Q |
101 |
aggatatctactagacaaagactctggcttcgaagatcatgatgaagacaaggaccttaaggacatgggctcccaaacacaagttaaacttgtgggtgat |
200 |
Q |
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| T |
23845309 |
aggatatctaccagacgaagactctggcttcgaagatcatgatgaagacaaggaccttaaggacatgggctcctgaacacaagttacacttgtgggtgat |
23845408 |
T |
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| Q |
201 |
tgttcgt------agtaatgtatgatttatgaagtaacatttcttctttgtcgagataattatgatga |
262 |
Q |
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| T |
23845409 |
tgttcgtctattatgcaatgtatgatttatgaagtaacattgcttctttgtcgagataattatgatga |
23845476 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 186
Target Start/End: Complemental strand, 28858322 - 28858150
Alignment:
| Q |
14 |
agacttaagtcaaacaccaaaatggattttcctcaagggagctgtggaggaacatgctagaagtggagtcgaagaagaataagcaagaggatatctacta |
113 |
Q |
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|||||| |||||||||||| ||| ||| | || || |||| |||||| | | ||||||||| || ||||||||||||| |||||||||||||||| | | |
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| T |
28858322 |
agacttgagtcaaacaccagaattaattcttcttaaaggagttgtggatgcatatgctagaa-tgaagtcgaagaagaagaagcaagaggatatctgcca |
28858224 |
T |
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| Q |
114 |
gacaaagactctggcttcgaagatcatgatgaagacaagga-ccttaaggacatgggctcccaaacacaagtta |
186 |
Q |
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| T |
28858223 |
gatgaagattctgacttcgaagatgatgaggaaggcaaggagcctgaaggttaggggctcccgagcacaagtta |
28858150 |
T |
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