View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18887_high_25 (Length: 261)
Name: NF18887_high_25
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_high_25 |
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| [»] scaffold0069 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 10648115 - 10647866
Alignment:
| Q |
1 |
ctatatgcctgttgtggaactcctgagtgacttgtgttgatccctcgatgtcaatttcaaaagttgagcaaccttgactagtcacccaacaatattttac |
100 |
Q |
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| T |
10648115 |
ctatatgcctgttgtggaactcctgagtgacttgtgttgatccctcgatgtcaattttgaaagttgagcaaccttgactagtcacccaacaatattttac |
10648016 |
T |
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| Q |
101 |
tagtgaaagtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcacatgtactcctggtttactatataaagttagtaatatag |
200 |
Q |
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| T |
10648015 |
tagtgaatgtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcacatgtactcctagtttactatataaagttagtaatatgg |
10647916 |
T |
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| Q |
201 |
tatgacattcagcctttgattgttagttcatcctttattttgggagtatt |
250 |
Q |
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| T |
10647915 |
tatgacattcagcctttgattgttagttcatcctttattttgggagtatt |
10647866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 75 - 181
Target Start/End: Original strand, 12178890 - 12178996
Alignment:
| Q |
75 |
tgactagtcacccaacaatattttactagtgaaagtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcacatgtactcctgg |
174 |
Q |
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| T |
12178890 |
tgactagtcacctgacaatattttactagtgagagtgtaaagcatcgaagttaaccagtgaggtgttgcttcaatagagacgctgaacatgtactcctag |
12178989 |
T |
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| Q |
175 |
tttacta |
181 |
Q |
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| T |
12178990 |
tctacta |
12178996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 182
Target Start/End: Original strand, 8680692 - 8680785
Alignment:
| Q |
89 |
acaatattttactagtgaaagtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcacatgtactcctggtttactat |
182 |
Q |
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| T |
8680692 |
acaatattttactagtgagagtgtcaagcaccgaagtaaactagtatggtgttccttcaacaaagacgttggacatgtactcctggtatactat |
8680785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 8391 - 8588
Alignment:
| Q |
1 |
ctatatgcctgttgtggaactcctgagtgacttgtgttgatccctcgatgtc------aatttcaaaagttgagcaaccttgactagtcacccaacaata |
94 |
Q |
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| T |
8391 |
ctatatgtctggtgtggaactcctatgtgactcgtgttgatcccacgatgtcgggacaaacttataaagctggacagccctgactaatcacctgacaata |
8490 |
T |
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| Q |
95 |
ttttactagtgaaagtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcacatgtactcctggtttactatataaagttag |
192 |
Q |
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| T |
8491 |
ttttactagtgagaatgtaaagcatcgaagtcaactagtgaggtgttgcttcaatagagacgctgaacatgtactcctagtctactatctagagttag |
8588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 10301226 - 10301128
Alignment:
| Q |
94 |
attttactagtgaaagtgtgaaacaccgaagttaactagtgaggtgttacttcaatagagacgttgcacatgtactcctggtttactatataaagttag |
192 |
Q |
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||||||||| |||||||||||| ||||||||| ||| ||||| |||| |||||| ||||| | | ||||||| |||| || |||||| || |||||| |
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| T |
10301226 |
attttactaatgaaagtgtgaagcaccgaagtcaacccgtgagatgttgcttcaaaagagatgctaaacatgtattcctagtctactatctagagttag |
10301128 |
T |
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