View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18887_high_31 (Length: 235)
Name: NF18887_high_31
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_high_31 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 13393085 - 13393017
Alignment:
| Q |
149 |
ttaaactgttgctctaaactcggatcctttgcaatcattcattcgatccagtcaaatctcaaccgttga |
217 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13393085 |
ttaaactgttgctgtaaactcagatccttttcaatcattcattcgatccagtcaaatctcaaccgttga |
13393017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 13393165 - 13393082
Alignment:
| Q |
4 |
accaatcattctaacatcttaaacttttaatcaaagacttacaaaataattttataatgaacttctagtatatgtggcagattaa |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || | ||||||||||| |
|
|
| T |
13393165 |
accaatcattctaacatcttaaacttttaatcaaagacttac-aaataattttataatgaacgtctaatacacatggcagattaa |
13393082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University