View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18887_high_33 (Length: 223)
Name: NF18887_high_33
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 208
Target Start/End: Original strand, 3416989 - 3417184
Alignment:
| Q |
19 |
tcttgctcatggaatcgcttagaacaaataatttactttttacggattctgatt------caagttcctatgtcgttccaaactttcctcttcctatcac |
112 |
Q |
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| T |
3416989 |
tcttgctcatggaatcccttagaacaaataatttactttttacggattctgattcggattcaagttcctatatcgttccaaactttcctcttcctatcac |
3417088 |
T |
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| Q |
113 |
catgtgcagtaaaccaccaaaggttctcagtaaattcataggactgatgcttgacacagtgttcaaaagtaatggcttcatcgtcaacaacttcat |
208 |
Q |
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| T |
3417089 |
catgtgcagtaaaccaccaaaggttctcagtaaattcataggactgatgcttgacacagtgttcaaaagtaatggctttatcgtcaacaacttcat |
3417184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 63 - 205
Target Start/End: Complemental strand, 12541355 - 12541213
Alignment:
| Q |
63 |
gattctgattcaagttcctatgtcgttccaaactttcctcttcctatcaccatgtgcagtaaaccaccaaaggttctcagtaaattcataggactgatgc |
162 |
Q |
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| T |
12541355 |
gattcggattcaagttcgtatgtcgttccaaattttcctcatcgtatcaccatgtgcagtaaaccgtcaaaggttctcagcaaattcataggattgatgc |
12541256 |
T |
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| Q |
163 |
ttgacacagtgttcaaaagtaatggcttcatcgtcaacaactt |
205 |
Q |
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| T |
12541255 |
ttgacacagtgttcaaaagtacaggctacattatcaacaactt |
12541213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 205
Target Start/End: Complemental strand, 28386007 - 28385862
Alignment:
| Q |
63 |
gattctgattcaagttcctatgtcgttccaaactttcctcttccta---tcaccatgtgcagtaaaccaccaaaggttctcagtaaattcataggactga |
159 |
Q |
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| T |
28386007 |
gattcagattcaagttcatatgtcgttccaaatcttcatcatgataatattaccttgtgtagtaaaccaccaaaggttctcagcatgttcataggaatga |
28385908 |
T |
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| Q |
160 |
tgcttgacacagtgttcaaaagtaatggcttcatcgtcaacaactt |
205 |
Q |
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| T |
28385907 |
tgcttgacacggtgctcaaaagtacaggctacatcatcaacaactt |
28385862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 207
Target Start/End: Complemental strand, 13440864 - 13440726
Alignment:
| Q |
69 |
gattcaagttcctatgtcgttccaaactttcctcttcctatcaccatgtgcagtaaaccaccaaaggttctcagtaaattcataggactgatgcttgaca |
168 |
Q |
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| T |
13440864 |
gattcaagttcctttgttgttccaaattttcctcatcgtataaccttgtgcggaaaaccgccaaaggtaattagcaaattcctaaaaatgatgcttggga |
13440765 |
T |
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| Q |
169 |
cagtgttcaaaagtaatggcttcatcgtcaacaacttca |
207 |
Q |
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| T |
13440764 |
cagtgctcaaaagtaaagcactcatcatcaacaacttca |
13440726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 184
Target Start/End: Complemental strand, 13449033 - 13448912
Alignment:
| Q |
63 |
gattctgattcaagttcctatgtcgttccaaactttcctcttcctatcaccatgtgcagtaaaccaccaaaggttctcagtaaattcataggactgatgc |
162 |
Q |
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| T |
13449033 |
gattcggattcaagttcctttgttgttccaaattttcctcaccatatcaccttgtgtggaaaaccgccaaaggtaatcggtatattcatgggaatgatgc |
13448934 |
T |
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| Q |
163 |
ttgacacagtgttcaaaagtaa |
184 |
Q |
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| T |
13448933 |
ttgagacggtgcttaaaagtaa |
13448912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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