View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18887_high_7 (Length: 488)
Name: NF18887_high_7
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Original strand, 40751554 - 40752018
Alignment:
| Q |
19 |
aagactttaagtttgtgattaatgttgatgagttatcacataaactactcaccaaatccttctttatccttccatcatcagaagaatttaaaaaaccaaa |
118 |
Q |
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| T |
40751554 |
aagactttaagtttgtgattaatgtagatgagttatcacataaactactcaccaaatccttctttatccttccatcatcagaagaatttaaaaaaccaaa |
40751653 |
T |
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| Q |
119 |
agcatttggagcaaccctcttgtaatttggaagtgatgagaatgcttgattcggacagattctgtagagaaatgatctatccgagcctttataaacatta |
218 |
Q |
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| T |
40751654 |
agcatttggagcaaccctcttgtaatttggaagtgatgagaatgcttgatttggacagattctgtagagaaatgatctatccgagcctttataaacatta |
40751753 |
T |
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| Q |
219 |
gatccttttcttgtgatgcaattatccggtaaaatagtagaagcagtagtagtgtttggttttgttgacatagaagcaaaattccaagaggcaagagaac |
318 |
Q |
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| T |
40751754 |
gatccttttcttgtgatgcaattatccggtaaaatagtagaagcagtagtagtgtttggttttgttgacatagaagcaaaattccaagaggcaagagaac |
40751853 |
T |
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| Q |
319 |
tagaaggtgtattatcatagaatcttccattctcataatcaattcttgtggtgtaagggaaattaagtatagaggagttagaaaaaacttcttgaaaact |
418 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40751854 |
tagaaggtgtattatcatagaatcttccattctcatatccaattcttgtggtgtaagggaaattaagtatagaggagttagaaaaaacttcttgaaaact |
40751953 |
T |
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| Q |
419 |
tctcttgccacataacttggattgttccctttgttttctagccattataacatgcctatgcttct |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
40751954 |
tctcttgccacataacttggattgttccctttgttttctagccattataacatgccaatgattct |
40752018 |
T |
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