View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18887_high_8 (Length: 453)
Name: NF18887_high_8
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 12 - 429
Target Start/End: Original strand, 15663543 - 15663960
Alignment:
| Q |
12 |
agaacctgtggtcgtgaacacttaccataaagtcccgagtttatacaagtgaggaacactatactccaatcgttttcctcgagtatttctttacatctag |
111 |
Q |
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| T |
15663543 |
agaaccagtggtcgtgaacacttaccataaagtcccgagtttatacaagtgaggaacactatactccaatcgttttcctcgagtatttctttacatttag |
15663642 |
T |
|
| Q |
112 |
gaaacaaataccatgccatctcactgtttgcttgtaaagcagccaagtaaagaggagtaacacctagtccacccctaattgatggtaactcttcattctt |
211 |
Q |
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| T |
15663643 |
gaaacaaatacgatgccatctcactgtttgcttgtaaagcagccaagtaaagaggagtaacacctagtccacccctaattgatggtaacacttcattctt |
15663742 |
T |
|
| Q |
212 |
tttgaccattatctcagcgatttgaacatttccaaccgctgcagcaaagcaaagagcagtgtttcccgggtaatcttgcaattccaaatcatcacgatcc |
311 |
Q |
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| T |
15663743 |
tttcaccattatctcagcgatttgaacatttccaaccgctgcagcaaagcaaagagcagtgtttcccgggtaatcttgcaatcccaaatcatcacgatcc |
15663842 |
T |
|
| Q |
312 |
attagttttaccaattcctccacaaagtgaacatgatttgctcccgctgcaatatggagtgcggttgcccacccatttgttatggcagaaatcagcaatg |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15663843 |
attagttttaccaattcctccacaaagtgaacatgatttgctcccgctgcaatatggagtgcggttgcccacccatttgttatggcagaaatcagcaatg |
15663942 |
T |
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| Q |
412 |
tttggtcctgttctatta |
429 |
Q |
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|||||||||||||||||| |
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| T |
15663943 |
tttggtcctgttctatta |
15663960 |
T |
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