View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18887_low_1 (Length: 610)
Name: NF18887_low_1
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 16 - 594
Target Start/End: Original strand, 43847973 - 43848551
Alignment:
| Q |
16 |
attatgtgatgataaggagcaacatttatatggtctcatggaaaccaaaatttataaagaacagctaccagaattagaaaaactttgcaagatagaagca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43847973 |
attatgtgatgataaggagcaacatttatatggtctcatggaaaccaaaatttataaagaacagctaccagaattagaaaaactttgcaagatagaagca |
43848072 |
T |
|
| Q |
116 |
ataaccatagattcatcatcaccatcaaaagcaacattcatctcagggatacttgcatccaactctggggtgggtggtgggggtgcaggaagtaataaac |
215 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43848073 |
ataaccattgattcatcatcaccatcaaaagcaacattcatctcagggatacttgcatccaactctggggtgggtggtgggggtgcaggaagtaataaac |
43848172 |
T |
|
| Q |
216 |
gaggaggttgctgtggatgagatacaaaagggtaatgaaaattagttctagcattatcaatgccacaaatcttaatagatgaaatatcataggccactgc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43848173 |
gaggaggttgctgtggatgagatacaaaagggtaatgaaaattagttctagcattatcaatgccacaaatcttaatagatgaaatatcataggccactgc |
43848272 |
T |
|
| Q |
316 |
agcttcttctgcagtgtcaaatgtgcctaaccaatgtctctctttggtataagggttcctaatttcagctgcatatcttccccatggtctttttctaaca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43848273 |
agcttcttctgcagtgtcaaatgtgcctaaccaatgtctctctttggtataagggttcctaatttcagctgcatatcttccccatggtctttttctaaca |
43848372 |
T |
|
| Q |
416 |
ccaagatacattgttgatctccttgaggttcttcttattgggtttttgaaaatcaatgggggaatattttccattggattattagtctttgaaatttaag |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
43848373 |
ccaagatacattgttgatctccttgaggttcttcttattgggtttttgaaaatcaatgggggaatattttccattggattattagtctttgaaatttgag |
43848472 |
T |
|
| Q |
516 |
cttaaagactgtgctatatataattaatggaataaatattgagaaggcatgtgatttgataattggtcaaaaaactact |
594 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43848473 |
cttaaagactgtgctatatataattgatggaataaatattgagaaggcatgtgatttgataattggtcaaaaaactact |
43848551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 314 - 421
Target Start/End: Original strand, 6507677 - 6507784
Alignment:
| Q |
314 |
gcagcttcttctgcagtgtcaaatgtgcctaaccaatgtctctctttggtataagggttcctaatttcagctgcatatcttccccatggtctttttctaa |
413 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||||||||||| ||||| || ||| | ||||||||||| |||||||| ||||| |||||| | || | |
|
|
| T |
6507677 |
gcagcttcttgagcagtatcaaatgttcctaaccaatgtctttctttagttgcaggatctctaatttcagcagcatatctaccccaaggtcttctcctta |
6507776 |
T |
|
| Q |
414 |
caccaaga |
421 |
Q |
| |
|
|||||||| |
|
|
| T |
6507777 |
caccaaga |
6507784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 421
Target Start/End: Complemental strand, 49385821 - 49385714
Alignment:
| Q |
314 |
gcagcttcttctgcagtgtcaaatgtgcctaaccaatgtctctctttggtataagggttcctaatttcagctgcatatcttccccatggtctttttctaa |
413 |
Q |
| |
|
|||||||||| ||||| ||||| || || | ||||||||| ||||| || ||||| ||||||||||| |||||||| ||||| |||||| | |||| |
|
|
| T |
49385821 |
gcagcttcttgagcagtatcaaaagtaccaagccaatgtctttctttagttgtagggtctctaatttcagcagcatatctaccccaaggtcttctcctaa |
49385722 |
T |
|
| Q |
414 |
caccaaga |
421 |
Q |
| |
|
|||||||| |
|
|
| T |
49385721 |
caccaaga |
49385714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University