View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18887_low_10 (Length: 435)
Name: NF18887_low_10
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 18639477 - 18639059
Alignment:
| Q |
1 |
aaatcctcaaatagttcaagggttatcagagtaattaaacctttgatattatatttttgcaggccacaatctgaatgggaatgcatccttaacattggag |
100 |
Q |
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| T |
18639477 |
aaatcctcaaatagttcaagggttatcagagtaattaaacctttgatattatatttttgcaggccacaatctgaatgggaatgcatccttaacattggag |
18639378 |
T |
|
| Q |
101 |
tgtggttcaacaaatactgcaaataattgcgtcgcaagtcacaatacttcctaaatattcaagtaatggaatgaggatttgcggcactgagacaccagct |
200 |
Q |
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| T |
18639377 |
tgtggttcaacaaatactgcaaataattgcgtcgcaagtcacaatacttcctaaatattcaagtaatggaatgaggatttgcggcactgagacaccagct |
18639278 |
T |
|
| Q |
201 |
atatccaccagagtcaattgtttgatacactttcagctaatcaacatttgaaacatgtttggagacaacannnnnnngttacattacaagtgacaagtga |
300 |
Q |
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| T |
18639277 |
atatccaccagagtcaattgtttgatacactttcagctaatcaacatttgaaacatgtttggagacaacatttttttgttacattacaagtgacaagtga |
18639178 |
T |
|
| Q |
301 |
aatgcatattgaagtgaacgctttggaatatgcacatgaaatgaaaacaagggttactggataatacttgttgcatgtaatgataaaatttggaatatgg |
400 |
Q |
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| T |
18639177 |
aatgcatattgaagtgaacgctttggaatatgcacatgaaatgaaaacaagggttactggataatacttgttgcatgtaatgataaaatttggaatatgg |
18639078 |
T |
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| Q |
401 |
tacaaataattcacagaaa |
419 |
Q |
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| T |
18639077 |
tacaaataattcacagaaa |
18639059 |
T |
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