View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18887_low_12 (Length: 399)
Name: NF18887_low_12
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 380
Target Start/End: Original strand, 2028496 - 2028876
Alignment:
| Q |
15 |
tcctcctcagttcaccacaaatatgcagaagatgcttgttgaaagttagctagaacttgtgatgataatcagcctaaataaaaattggcaacaccatggt |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2028496 |
tccttctcagttcaccacaaatatgcagaagatgcttgttgaaagttaactagaacttgtgatgataatcaacctaaataaaaattggcaacaccatggt |
2028595 |
T |
|
| Q |
115 |
gaaattgaatgaagattatggttgtttatatcttattttttattgggtttaatagcaaaggtagactagagg-----------tcaaccgcttaattaaa |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| |
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| T |
2028596 |
gaaattgaatgaagattatggttgtttatatcttattttttattgggtttaatag-aaaggtagactagatgtttaactttcatcaaccgcttaattaaa |
2028694 |
T |
|
| Q |
204 |
tttcca------taataactatgaacagagaagttgcaatctatttgattgaatgaacgttaacgggctttcgacttggattggtttggtaccaccatcc |
297 |
Q |
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|||||| ||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2028695 |
tttccatttccgtaacaattatgaacagagaagttgcaatctatttgattgaatgaacattaacgggctttcgacttggattggtttggtaccaccatcc |
2028794 |
T |
|
| Q |
298 |
gaaattcgattataatcatgtgttattgtttgttaaatgatggttacttattttgctgaaacataatggttacttattttgtc |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| |
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| T |
2028795 |
gaaattcgattataatcatgtgttattgtttgttaaatgatgg-aaattgatttgctgaaacataatggttacttattttgtc |
2028876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 919225 - 919269
Alignment:
| Q |
285 |
ggtaccaccatccgaaattcgattataatcatgtgttattgtttg |
329 |
Q |
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| T |
919225 |
ggtaccaccaccctcaattcgattataatcatatgttattgtttg |
919269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 56 - 380
Target Start/End: Complemental strand, 46491548 - 46491218
Alignment:
| Q |
56 |
aaagttagctagaacttgtgatgataatcagcctaaataaaaattggcaacaccatggtgaaattgaatgaagattatggttgtttatatcttatttttt |
155 |
Q |
| |
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||||||| |||||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
46491548 |
aaagttaactagaacttgtgatgataatcaatctcaataataattggcaacaccatggtgaaatt----------tatggttgtttatatattatttttt |
46491459 |
T |
|
| Q |
156 |
attgggtttaatagcaaaggtagactagaggt-----------caaccgcttaattaaatttccat------aataactatgaacagagaagttgcaatc |
238 |
Q |
| |
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| |||||||||||||||||||||| ||||||| ||||| ||||||||||||||||| || ||||||||||| ||||||||||||| |
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| T |
46491458 |
actgggtttaatagcaaaggtagaatagaggtttaaattccaccaaccacttaattaaatttccatttccataacaactatgaacatagaagttgcaatc |
46491359 |
T |
|
| Q |
239 |
tatttgattgaatgaacgttaacgggctttcgacttggattggtttggtaccaccatccgaaattcgattataatcatgtgttattgtttgttaaatgat |
338 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
46491358 |
tatttgattgaatgaacgttaacggactttcgacttggattggtttggtaccagcatccaaaattcaattataatcatgtgttattgtttgttaaatgat |
46491259 |
T |
|
| Q |
339 |
ggttacttattttgctgaaacataatggttacttattttgtc |
380 |
Q |
| |
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|| | || |||| ||||||||||||||||||||||||||| |
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| T |
46491258 |
gg-aaattgatttgttgaaacataatggttacttattttgtc |
46491218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 10590520 - 10590600
Alignment:
| Q |
95 |
aaaattggcaacaccatggtgaaattgaatgaagattatggttgtttatatcttattttttattgggtttaatagcaaaggtaga |
179 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| ||||||| ||||| | | ||||| ||||||||||||| |||||||||| |
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| T |
10590520 |
aaaattggccacaccatggtgcaattgaatgaaaattatggatgtttttgt----tttttgattgggtttaataacaaaggtaga |
10590600 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 71 - 380
Target Start/End: Original strand, 127241 - 127555
Alignment:
| Q |
71 |
ttgtgatgataatcagcctaaataaaaattggcaacaccatggtgaaattgaatgaagattatggttgtttatatcttattttttattgggtttaatagc |
170 |
Q |
| |
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||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| || ||||||| |||||||||| || |
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| T |
127241 |
ttgtgatgataatcaacctcaataaaaattggcaacaccatggtgaaatt----------tatggttgtttatatgtt-ttttttactgggtttaatggc |
127329 |
T |
|
| Q |
171 |
aaaggtagactagaggt-----------caaccgcttaattaaatttccat------aataactatgaacagagaagttgcaatctatttgattgaatga |
253 |
Q |
| |
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||||||||| ||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
127330 |
aaaggtagaatagaggtttaaatttcaccaaccacttaattaaatttccatttctataactactatgaacagagaagttgcaatctatttgattgaatga |
127429 |
T |
|
| Q |
254 |
acgttaacgggctttcgacttggattggtttggtaccaccatccgaaattcgattataatcatgtgttattgtttgttaaatgatggttacttattttgc |
353 |
Q |
| |
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||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | || ||||| |
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| T |
127430 |
acgttaaaggactttcgacttggattggtttggtaccaccatccaaaattcgattataatcatgtgttattgtttgttaaatgatgg-aaattgatttgc |
127528 |
T |
|
| Q |
354 |
tgaaacataatggttacttattttgtc |
380 |
Q |
| |
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|||||||||| |||||||||||||||| |
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| T |
127529 |
tgaaacataagggttacttattttgtc |
127555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 25 - 187
Target Start/End: Complemental strand, 2226578 - 2226420
Alignment:
| Q |
25 |
ttcaccacaaatatgcagaagatgcttgttgaaagttagctagaacttgtgatgataatcagcctaaataaaaattggcaacaccatggtgaaattgaat |
124 |
Q |
| |
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|||| ||||||||||| ||||||||||| | ||||||| || ||| | ||||||||||||||||||||||||||| || | |||||| ||||||||||| |
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| T |
2226578 |
ttcaacacaaatatgcggaagatgcttgcttaaagttaact-gaattggtgatgataatcagcctaaataaaaatcggacataccatgatgaaattgaat |
2226480 |
T |
|
| Q |
125 |
gaagattatggttgtttatatcttattttttattgggtttaatagcaaaggtagactagaggt |
187 |
Q |
| |
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||||||||| | ||||| ||| | ||||||||||||||||||||||||||||| ||||||| |
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| T |
2226479 |
gaagattattgatgttt-tatgt--ttttttattgggtttaatagcaaaggtaggatagaggt |
2226420 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 25 - 187
Target Start/End: Original strand, 16449724 - 16449882
Alignment:
| Q |
25 |
ttcaccacaaatatgcagaagatgcttgttgaaagttagctagaacttgtgatgataatcagcctaaataaaaattggcaacaccatggtgaaattgaat |
124 |
Q |
| |
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|||| ||||||||||| ||||||||||| | ||||||| || ||||| ||||||||||||||||||||||||||| || | |||||| ||||||| || |
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| T |
16449724 |
ttcaacacaaatatgcggaagatgcttgcttaaagttaact-gaactggtgatgataatcagcctaaataaaaatcggacataccatgatgaaattaaac |
16449822 |
T |
|
| Q |
125 |
gaagattatggttgtttatatcttattttttattgggtttaatagcaaaggtagactagaggt |
187 |
Q |
| |
|
||||||||| ||||| ||| | |||||||||||||||||||||||||||||| ||||||| |
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| T |
16449823 |
gaagattatttatgttt-tatgt--ttttttattgggtttaatagcaaaggtagaatagaggt |
16449882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 25 - 187
Target Start/End: Original strand, 16459298 - 16459457
Alignment:
| Q |
25 |
ttcaccacaaatatgcagaagatgcttgttgaaagttagctagaacttgtgatgataatcagcctaaataaaaattggcaacaccatggtgaaattgaat |
124 |
Q |
| |
|
|||| ||||||||||| ||||||||||| | ||||||| || ||||| ||||||||||||||||||||||||||| || | |||||| ||||||| || |
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| T |
16459298 |
ttcaacacaaatatgcggaagatgcttgcttaaagttaact-gaactggtgatgataatcagcctaaataaaaatcggacataccatgatgaaattaaac |
16459396 |
T |
|
| Q |
125 |
gaagattatggttgtttatatcttattttttattgggtttaatagcaaaggtagactagaggt |
187 |
Q |
| |
|
||||||||| ||||| ||| || ||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
16459397 |
gaagattatttatgttt-tatgtt-tttttatttgggtttaatagcaaaggtagaatagaggt |
16459457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 202791 - 202898
Alignment:
| Q |
77 |
tgataatcagcctaaataaaaattggcaacaccatggtgaaattgaatgaagattatggttgtttatatcttattttttattgggtttaatagcaaaggt |
176 |
Q |
| |
|
||||||||||||||||||||||| || | |||||| ||||||| |||||||||||| ||||| | | |||||||||||||||||||||||||||| |
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|
| T |
202791 |
tgataatcagcctaaataaaaatcggacataccatgatgaaattaaatgaagattatttatgttt---tatgattttttattgggtttaatagcaaaggt |
202887 |
T |
|
| Q |
177 |
agactagaggt |
187 |
Q |
| |
|
||| ||||||| |
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|
| T |
202888 |
agaatagaggt |
202898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 317628 - 317735
Alignment:
| Q |
77 |
tgataatcagcctaaataaaaattggcaacaccatggtgaaattgaatgaagattatggttgtttatatcttattttttattgggtttaatagcaaaggt |
176 |
Q |
| |
|
||||||||||||||||||||||| || | |||||| ||||||| |||||||||||| ||||| | | |||||||||||||||||||||||||||| |
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|
| T |
317628 |
tgataatcagcctaaataaaaatcggacataccatgatgaaattaaatgaagattatttatgttt---tatgattttttattgggtttaatagcaaaggt |
317724 |
T |
|
| Q |
177 |
agactagaggt |
187 |
Q |
| |
|
||| ||||||| |
|
|
| T |
317725 |
agaatagaggt |
317735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 34451040 - 34451122
Alignment:
| Q |
91 |
aataaaaattggcaacaccatggtgaaattgaatgaagattatggttgtttatatcttattttttattgggtttaatagcaaaggtaga |
179 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||||| || ||||||| ||||| ||||||||||||||| ||||||||||||| |
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| T |
34451040 |
aatagaaattggcaacaccatggtaaaattgaatgaaaatgatggttg-----atctt-gtttttattgggtttagtagcaaaggtaga |
34451122 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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