View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18887_low_13 (Length: 398)
Name: NF18887_low_13
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 2 - 384
Target Start/End: Complemental strand, 42179072 - 42178687
Alignment:
| Q |
2 |
ataggatgcaaaacaaggtggagaatacaccaattttggcctctagcattaagagagtggcattttgtgtgaatctctaacaacttggaagaattaatac |
101 |
Q |
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| T |
42179072 |
ataggatgcaaaacaaggtggagaatacaccaattttggcctctagcattaagagagtggcattttgtgtgaatctctaacaacttggaagaattaatac |
42178973 |
T |
|
| Q |
102 |
actcatataggccattatacactaaaattacaagagcacaaagccaaaatgtactgaacatgatagacatatcttagtggatgcttcactttagtagaac |
201 |
Q |
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| T |
42178972 |
actcatataggccattatgcactaaacttacaagagcacaaagccaaaacgtactgaacatgatagacatattttagtggatgcttcactttagtagaac |
42178873 |
T |
|
| Q |
202 |
aagaactaataagtcacaaag-tttaagtagctttaagatttgtaccattgcaccatgtttccaatgaagcaaggattttaatggaaaaaataagaagga |
300 |
Q |
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| T |
42178872 |
aagaactaataaatcacaaagttttaagtagctttaagatttgtaccattgcaccatgtttccaatgaagcaaggattttaatggaaaaaataagaagga |
42178773 |
T |
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| Q |
301 |
tggacaagtctgtttctgtc-tttttgtgtgtccctcaactattgggggcttgcctcaaactatactcta-ttttggtccttcgtg |
384 |
Q |
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| T |
42178772 |
tggacaagtctgtttctgtcttttttgtgtgtccctcaactattgggggcttgcctcaaactatactctatttttggtccttcgtg |
42178687 |
T |
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