View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18887_low_14 (Length: 390)

Name: NF18887_low_14
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18887_low_14
NF18887_low_14
[»] chr4 (8 HSPs)
chr4 (83-314)||(42719628-42719859)
chr4 (98-268)||(42744864-42745034)
chr4 (98-268)||(42754223-42754393)
chr4 (17-54)||(42719890-42719927)
chr4 (99-278)||(42764053-42764232)
chr4 (330-372)||(21983507-21983549)
chr4 (324-372)||(42719562-42719611)
chr4 (128-184)||(42771473-42771529)
[»] chr7 (6 HSPs)
chr7 (327-372)||(47456703-47456748)
chr7 (330-372)||(28534137-28534179)
chr7 (331-372)||(38485971-38486012)
chr7 (327-372)||(40292639-40292684)
chr7 (327-372)||(6726048-6726094)
chr7 (331-372)||(48058306-48058347)
[»] chr2 (6 HSPs)
chr2 (327-372)||(15361130-15361175)
chr2 (330-372)||(33788258-33788300)
chr2 (331-368)||(6173851-6173888)
chr2 (325-369)||(22884741-22884786)
chr2 (330-371)||(25504521-25504562)
chr2 (327-372)||(29487506-29487551)
[»] chr6 (3 HSPs)
chr6 (330-369)||(16180489-16180528)
chr6 (327-372)||(3880241-3880287)
chr6 (330-367)||(4043349-4043387)
[»] chr8 (1 HSPs)
chr8 (330-372)||(8843746-8843788)
[»] chr5 (1 HSPs)
chr5 (330-371)||(8731345-8731386)
[»] chr1 (1 HSPs)
chr1 (331-372)||(37582508-37582549)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 83 - 314
Target Start/End: Complemental strand, 42719859 - 42719628
Alignment:
Q  83 aattgatgctacccaattggtgaatgcagagaatcctaatgtcatatcaattttcttgaacaaaaaacataaacttcaaacaacgcactcatgggatttc 182  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42719859 aattgatgctacccaattggtgaatgcagagaatcctaatgttatatcaattttcttgaacaaaaaacataaacttcaaacaacgcactcatgggatttc 42719760  T
Q  183 cttcggttaaagagcaatggtggaattccaaaggattcaatatggaagagatcatttggtgaagatattatcattggaaatatagatacgggtaatgaat 282  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42719759 cttcggttaaagagcaatggtggaattcgaaaggattcaatatggaagagatcatttggtgaagatattatcattggaaatatagatacgggtaatgaat 42719660  T
Q  283 gatgaatcatatctttatattgctgcatgtga 314  Q
    ||||||||||||||||||||||||||||||||    
T  42719659 gatgaatcatatctttatattgctgcatgtga 42719628  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 42745034 - 42744864
Alignment:
Q  98 attggtgaatgcagagaatcctaatgtcatatcaattttcttgaacaaaaaacataaacttcaaacaacgcactcatgggatttccttcggttaaagagc 197  Q
    |||||||||||||||| |||| |||||  |||| ||||| || ||  ||||| || ||||  | ||||| |  || |||||||| ||| ||||| ||||     
T  42745034 attggtgaatgcagagcatccgaatgtagtatcgatttttttaaatgaaaaatatgaactatacacaacccggtcgtgggattttcttgggttagagaga 42744935  T
Q  198 aatggtggaattccaaaggattcaatatggaagagatcatttggtgaagatattatcattggaaatataga 268  Q
      ||||||| |||||||||||||| | |||||||||||||| |||||||| ||||| ||||||||| ||||    
T  42744934 ggtggtggatttccaaaggattcattgtggaagagatcattgggtgaagacattattattggaaatttaga 42744864  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 42754393 - 42754223
Alignment:
Q  98 attggtgaatgcagagaatcctaatgtcatatcaattttcttgaacaaaaaacataaacttcaaacaacgcactcatgggatttccttcggttaaagagc 197  Q
    |||||||||||||||| |||| |||||  |||| ||||| || ||  ||||| || ||||  | ||||| |  || |||||||| ||| ||||| ||||     
T  42754393 attggtgaatgcagagcatccgaatgtagtatcgatttttttaaatgaaaaatatgaactatacacaacccggtcgtgggattttcttgggttagagaga 42754294  T
Q  198 aatggtggaattccaaaggattcaatatggaagagatcatttggtgaagatattatcattggaaatataga 268  Q
      ||||||| |||||||||||||| | |||||||||||||| |||||||| ||||| ||||||||| ||||    
T  42754293 ggtggtggatttccaaaggattcattgtggaagagatcattgggtgaagacattattattggaaatttaga 42754223  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 42719927 - 42719890
Alignment:
Q  17 ttgcaagtatgtaattatcatcatgcattgattcctta 54  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42719927 ttgcaagtatgtaattatcatcatgcattgattcctta 42719890  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 278
Target Start/End: Complemental strand, 42764232 - 42764053
Alignment:
Q  99 ttggtgaatgcagagaatcctaatgtcatatcaattttcttgaacaaaaaacataaacttcaaacaacgcactcatgggatttccttcggttaaagagca 198  Q
    ||||| ||||||||| |||| |||||  ||||| ||||||| ||||||||| || |||| || ||||| |  ||||||| ||||||| | ||| ||||      
T  42764232 ttggtaaatgcagagcatccaaatgtagtatcagttttcttaaacaaaaaatatgaactacacacaactcggtcatggggtttccttggtttagagagag 42764133  T
Q  199 atggtggaattccaaaggattcaatatggaagagatcatttggtgaagatattatcattggaaatatagatacgggtaat 278  Q
     ||||| | || ||||||||||| | ||||||| |||| ||||  |||| ||||| || |||||| |||| || ||||||    
T  42764132 gtggtgaattttcaaaggattcattgtggaagaaatcacttggcaaagacattattatcggaaatttagacaccggtaat 42764053  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 372
Target Start/End: Original strand, 21983507 - 21983549
Alignment:
Q  330 caaattttattaaaaatcaaatctctgctcaagacgaacagag 372  Q
    ||||||||||||||||||| ||| |||||||||||||||||||    
T  21983507 caaattttattaaaaatcagatccctgctcaagacgaacagag 21983549  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 324 - 372
Target Start/End: Complemental strand, 42719611 - 42719562
Alignment:
Q  324 aagcaacaaattttattaaa-aatcaaatctctgctcaagacgaacagag 372  Q
    |||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  42719611 aagcaacaaattttattaaacaatcaaatccctgctcaagacgaatagag 42719562  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 42771529 - 42771473
Alignment:
Q  128 atcaattttcttgaacaaaaaacataaacttcaaacaacgcactcatgggatttcct 184  Q
    |||||||||||| ||||||  ||  |||||||| ||||| |||||||||||||||||    
T  42771529 atcaattttcttaaacaaaccacgaaaacttcacacaactcactcatgggatttcct 42771473  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 47456703 - 47456748
Alignment:
Q  327 caacaaattttattaaaaatcaaatctctgctcaagacgaacagag 372  Q
    ||||||||||||||||||| || |||||||||||||||||||||||    
T  47456703 caacaaattttattaaaaaccagatctctgctcaagacgaacagag 47456748  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 372
Target Start/End: Original strand, 28534137 - 28534179
Alignment:
Q  330 caaattttattaaaaatcaaatctctgctcaagacgaacagag 372  Q
    |||||||||||||||| ||||||| ||||||||||||||||||    
T  28534137 caaattttattaaaaaccaaatctttgctcaagacgaacagag 28534179  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 372
Target Start/End: Complemental strand, 38486012 - 38485971
Alignment:
Q  331 aaattttattaaaaatcaaatctctgctcaagacgaacagag 372  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  38486012 aaattttattaaaaatcaggtctctgctcaagacgaacagag 38485971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 40292639 - 40292684
Alignment:
Q  327 caacaaattttattaaaaatcaaatctctgctcaagacgaacagag 372  Q
    |||||||||||||||||||||| ||| || ||||||||||||||||    
T  40292639 caacaaattttattaaaaatcagatccctcctcaagacgaacagag 40292684  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 6726048 - 6726094
Alignment:
Q  327 caacaaattttattaaa-aatcaaatctctgctcaagacgaacagag 372  Q
    ||||||||||||||||| || || |||||||||||||||||||||||    
T  6726048 caacaaattttattaaacaaccagatctctgctcaagacgaacagag 6726094  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 372
Target Start/End: Original strand, 48058306 - 48058347
Alignment:
Q  331 aaattttattaaaaatcaaatctctgctcaagacgaacagag 372  Q
    ||||||||||||||| || ||||||||||||||| |||||||    
T  48058306 aaattttattaaaaaccatatctctgctcaagacaaacagag 48058347  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 15361175 - 15361130
Alignment:
Q  327 caacaaattttattaaaaatcaaatctctgctcaagacgaacagag 372  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||    
T  15361175 caacaaattttattaaaaatcaaatccctgctcaagacgaatagag 15361130  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 372
Target Start/End: Original strand, 33788258 - 33788300
Alignment:
Q  330 caaattttattaaaaatcaaatctctgctcaagacgaacagag 372  Q
    ||||||||||| |||| |||||||||||| |||||||||||||    
T  33788258 caaattttatttaaaaccaaatctctgctaaagacgaacagag 33788300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 368
Target Start/End: Original strand, 6173851 - 6173888
Alignment:
Q  331 aaattttattaaaaatcaaatctctgctcaagacgaac 368  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  6173851 aaattttattaaaaatcagatctctgcacaagacgaac 6173888  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 22884741 - 22884786
Alignment:
Q  325 agcaacaaattttatt-aaaaatcaaatctctgctcaagacgaaca 369  Q
    |||| ||||||||||| ||||| |||||||||||||||||||||||    
T  22884741 agcatcaaattttatttaaaaaccaaatctctgctcaagacgaaca 22884786  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 25504521 - 25504562
Alignment:
Q  330 caaattttattaaaaatcaaatctctgctcaagacgaacaga 371  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||    
T  25504521 caaattttattaaaaatcagatccctgctcaagacaaacaga 25504562  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 29487551 - 29487506
Alignment:
Q  327 caacaaattttattaaaaatcaaatctctgctcaagacgaacagag 372  Q
    ||||||||||||||||||| || ||| |||||||||| ||||||||    
T  29487551 caacaaattttattaaaaaccagatccctgctcaagatgaacagag 29487506  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 369
Target Start/End: Original strand, 16180489 - 16180528
Alignment:
Q  330 caaattttattaaaaatcaaatctctgctcaagacgaaca 369  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  16180489 caaattttattaaaaatcagatctctgctcaagacgaaca 16180528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 3880241 - 3880287
Alignment:
Q  327 caacaaattttattaaa-aatcaaatctctgctcaagacgaacagag 372  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||||    
T  3880241 caacaaattttattaaacaatcagatccctgctcaagacgaacagag 3880287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 367
Target Start/End: Original strand, 4043349 - 4043387
Alignment:
Q  330 caaattttatt-aaaaatcaaatctctgctcaagacgaa 367  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  4043349 caaattttatttaaaaatcaaatctctgctcaagacgaa 4043387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 372
Target Start/End: Original strand, 8843746 - 8843788
Alignment:
Q  330 caaattttattaaaaatcaaatctctgctcaagacgaacagag 372  Q
    ||||||||||||||||||||||| || ||||||||||||||||    
T  8843746 caaattttattaaaaatcaaatcccttctcaagacgaacagag 8843788  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 371
Target Start/End: Complemental strand, 8731386 - 8731345
Alignment:
Q  330 caaattttattaaaaatcaaatctctgctcaagacgaacaga 371  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||    
T  8731386 caaattttattaaaaatcagatccctgctcaagacaaacaga 8731345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 372
Target Start/End: Complemental strand, 37582549 - 37582508
Alignment:
Q  331 aaattttattaaaaatcaaatctctgctcaagacgaacagag 372  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||    
T  37582549 aaattttattaaaaaccaagtctctgcacaagacgaacagag 37582508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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