View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18887_low_17 (Length: 369)
Name: NF18887_low_17
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 198 - 352
Target Start/End: Complemental strand, 34122230 - 34122076
Alignment:
| Q |
198 |
ataagctatatcatgattttcaataatatcaaatatcacgacgcgaccacaatgatttgtgcaactttgatttaaaaccttatgaatgaagttagttagc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34122230 |
ataagctatatcatgattttcaataatatcaaatatcacgacgcgaccacaatgatttctgcaactttgatttaaaaccttatgaatgaagttagttagc |
34122131 |
T |
|
| Q |
298 |
caattagttaaaagatatttatgaagtactaacacaaatacgaagatcagacact |
352 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34122130 |
caattagttaaaaggtatttatgaagtactaacacaaatacgaagatcagacact |
34122076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 34122373 - 34122233
Alignment:
| Q |
11 |
catcatcatggtctacaaggtaaggctttttatgtccacaatgttcaaacaatgtttgcacaatgttcttcaaatctggatttttcgccacatgaaagaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34122373 |
catcatcatggtctacaaggtaaggctttttatgtccacaatgttcaaacaatgtttgcacaatgttcttcaaatctggatttttcgccacatgaaagaa |
34122274 |
T |
|
| Q |
111 |
caatatattttccccaaattttcctagtccaaacaaacaaa |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34122273 |
caatatattttccccaaattttcctagtccaaacaaacaaa |
34122233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 34110587 - 34110461
Alignment:
| Q |
42 |
atgtccacaatgttcaaacaatgtttgcacaatgttcttcaaatctggatttttcgccacatgaaagaacaatatattttccccaaattttcctagtcca |
141 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||||||||||||||| |||| |||| | |||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34110587 |
atgtccacaatgtcgaaataatgtctgcacaatgttcttcaaatttggaatttttgacacagtgaagaacaatatattttccccaaatttacctagtcca |
34110488 |
T |
|
| Q |
142 |
aacaaacaaacaagattcttaaatatc |
168 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
34110487 |
aacaaacaaataagattcttaaatatc |
34110461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University