View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18887_low_18 (Length: 357)
Name: NF18887_low_18
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 38753286 - 38752954
Alignment:
| Q |
18 |
aaccagttgatgtggttgtggcacaggtacatgatgagactgttggaaattcaaggtgataggtcccttgtgtgttgcaaatgacatggcagattttatg |
117 |
Q |
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| T |
38753286 |
aaccagttgatgtggttgtggcacaggtacatgatgaggttgttggaaattcaaggtgataggtcccttgtgtgttgcaaatgacatggcagattttatg |
38753187 |
T |
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| Q |
118 |
gtaggacaacctgtgaattgttgaaccaaagccctgaaatttgtgctattggcattgagaagagtaattggagttttctttgaagctctagatctttttc |
217 |
Q |
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| T |
38753186 |
gtaggacaacctgtgaattgttgaaccaaagccctgaaatttgtgctattggcattgagaagagtgattggagttttctttgaagctctagatctttttc |
38753087 |
T |
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| Q |
218 |
tgattggtttgaatgtgttgttctttggggtcaagtgaccatttgatgacatggtgggacttgttgtcaccatagttgcatgtgagaatcctgccatgct |
317 |
Q |
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| T |
38753086 |
tgattggtttgaatgtgttgttctttggggtcaagtgaccatttgatgacatggtgggacttgttgtaaccatagttgcatgtgagaatccttccatgct |
38752987 |
T |
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| Q |
318 |
aatatccatgaaaggtcgttgatgatgatgatg |
350 |
Q |
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| T |
38752986 |
aatatccatgaaaggttgttgatgatgatgatg |
38752954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 7006082 - 7006139
Alignment:
| Q |
116 |
tggtaggacaacctgtgaattgttgaaccaaagccctgaaatttgtgctattggcatt |
173 |
Q |
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| T |
7006082 |
tggtaggacagcctgtgaatagttaaaccaaagctctgaaatttgttgtattggcatt |
7006139 |
T |
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