View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18887_low_2 (Length: 598)

Name: NF18887_low_2
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18887_low_2
NF18887_low_2
[»] chr7 (3 HSPs)
chr7 (370-567)||(8547960-8548157)
chr7 (206-304)||(8548241-8548340)
chr7 (13-53)||(46364743-46364783)
[»] chr3 (16 HSPs)
chr3 (13-303)||(54763552-54763844)
chr3 (175-303)||(54765515-54765644)
chr3 (13-138)||(54764630-54764755)
chr3 (175-303)||(54764303-54764432)
chr3 (45-140)||(54764047-54764141)
chr3 (79-225)||(1317496-1317643)
chr3 (216-268)||(54764962-54765014)
chr3 (13-76)||(54765239-54765303)
chr3 (21-135)||(54765800-54765913)
chr3 (214-286)||(1317867-1317939)
chr3 (89-140)||(54765342-54765393)
chr3 (212-254)||(49827595-49827637)
chr3 (13-58)||(1317478-1317523)
chr3 (15-132)||(49827273-49827389)
chr3 (13-57)||(4358573-4358617)
chr3 (13-53)||(26059979-26060019)
[»] chr2 (7 HSPs)
chr2 (13-303)||(1076502-1076794)
chr2 (175-303)||(1077281-1077410)
chr2 (216-303)||(1077907-1077994)
chr2 (13-138)||(1077609-1077734)
chr2 (13-132)||(1076993-1077111)
chr2 (21-118)||(1078149-1078245)
chr2 (146-187)||(1077496-1077537)
[»] chr5 (6 HSPs)
chr5 (14-301)||(27432971-27433269)
chr5 (13-131)||(27433988-27434104)
chr5 (15-124)||(13549404-13549512)
chr5 (11-118)||(27433224-27433328)
chr5 (169-270)||(43250540-43250642)
chr5 (214-286)||(13549603-13549675)
[»] chr4 (9 HSPs)
chr4 (120-303)||(54960791-54960975)
chr4 (13-132)||(54962274-54962392)
chr4 (97-270)||(54962554-54962728)
chr4 (13-76)||(54961336-54961399)
chr4 (220-270)||(54962236-54962286)
chr4 (13-132)||(54960930-54961047)
chr4 (213-286)||(54961932-54962005)
chr4 (13-57)||(18122469-18122513)
chr4 (13-53)||(36032302-36032342)
[»] scaffold0206 (4 HSPs)
scaffold0206 (154-303)||(10643-10793)
scaffold0206 (13-137)||(11228-11352)
scaffold0206 (13-139)||(10564-10688)
scaffold0206 (216-270)||(11340-11394)
[»] chr1 (9 HSPs)
chr1 (13-76)||(20201248-20201311)
chr1 (172-254)||(30219122-30219205)
chr1 (169-287)||(20202299-20202417)
chr1 (213-270)||(20201203-20201260)
chr1 (213-254)||(30219566-30219607)
chr1 (13-53)||(4291405-4291445)
chr1 (15-106)||(22522028-22522116)
chr1 (13-53)||(37398410-37398450)
chr1 (13-53)||(41778155-41778195)
[»] chr6 (9 HSPs)
chr6 (13-76)||(30696191-30696254)
chr6 (15-76)||(30695946-30696007)
chr6 (13-65)||(5324034-5324086)
chr6 (169-299)||(30696212-30696344)
chr6 (18-80)||(18754290-18754352)
chr6 (13-118)||(5323788-5323892)
chr6 (154-254)||(30693293-30693394)
chr6 (24-116)||(5323007-5323098)
chr6 (164-267)||(5324535-5324638)
[»] scaffold0517 (1 HSPs)
scaffold0517 (13-53)||(9198-9238)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 370 - 567
Target Start/End: Complemental strand, 8548157 - 8547960
Alignment:
Q  370 gccaattcactcttttacttttgctacaaaatcttgcctataaaaaattgttttgagcgcattcttacaacaccacaaagagcgcaagatttcaaagaaa 469  Q
    ||||||||||||||||| ||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8548157 gccaattcactcttttatttttgctacaaaatcttgtttataaagaattgttttgagcgcattcttacaacaccacaaagagcgcaagatttcaaagaaa 8548058  T
Q  470 actacatttggacacttcagtccgtgtgagttgaaatcaagaagaaaaatccaaaactttcgttttcacattcattcacactcaagtaaaaaaccaag 567  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8548057 actacattttgacacttcagtccgtgtgagttgaaatcaagaacaaaaatccaaaactttcgttttcacattcattcacactcaagtaaaaaaccaag 8547960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 206 - 304
Target Start/End: Complemental strand, 8548340 - 8548241
Alignment:
Q  206 tttaaacatttagaatatcactttgcttcaattttacaatgatattgaattgtc-atcaactaaaagacatgagataagtgagattgtctaaaatatcgc 304  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| || |||| |||| ||||||||||| |||||| |||||| ||||||||||||||    
T  8548340 tttatacatttagaatatcacttcgcttcaattttacaatgatattaaactgtctatcacctaaaagacataagataactgagatcgtctaaaatatcgc 8548241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 46364783 - 46364743
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaa 53  Q
    |||| ||||||||||||||||||||||| |||||| |||||    
T  46364783 tcataaactaaaatgcacgggataaatgaacattgactaaa 46364743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 54763552 - 54763844
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttcagaatt 112  Q
    ||||||||||||||||||| ||||| |||||||||||||||| || |||||||||||||||||| |||||||||| | || || ||||||||||||||||    
T  54763552 tcatcaactaaaatgcacgagataagtggacattgtctaaaaattcgtaaatatataaaatgca-ggggagaagtgggcaatgcctaaaatttcagaatt 54763650  T
Q  113 aactcatatgtac---aagataaattgaca-cggtataattaacttttgatacctgggataagttgtcatttataaaaaattgtttgtgataaaatattt 208  Q
    |||||| ||||||   |||||||||||||| ||    ||||||| |||||||||||| | ||||||||||||||||||| |||||  |||||||||||||    
T  54763651 aactcaaatgtacaagaagataaattgacatcgactaaattaac-tttgatacctggaacaagttgtcatttataaaaatttgttcatgataaaatattt 54763749  T
Q  209 aaac-atttagaatatcactttgcttcaattttacaatgatattgaattgtcatcaactaaaagacatgagataagtgagattgtctaaaatatcg 303  Q
    | || ||  |||||||||||| |||| |||||||||||||||| ||| |||||||||||||||  || ||||| ||||||||||| ||||||||||    
T  54763750 atactatccagaatatcacttcgcttaaattttacaatgatatagaactgtcatcaactaaaatgcacgagat-agtgagattgtataaaatatcg 54763844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 175 - 303
Target Start/End: Original strand, 54765515 - 54765644
Alignment:
Q  175 tcatttataaaaaattgtttgtgataaaatatttaaac-atttagaatatcactttgcttcaattttacaatgatattgaattgtcatcaactaaaagac 273  Q
    ||||||||||| | |||||  ||||||||| |||  || || ||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||| ||    
T  54765515 tcatttataaatatttgttcatgataaaatgtttttactatctagaatatcacttcgtttcaattctacaatgatattgaactgtcatcaactaaaatac 54765614  T
Q  274 atgagataagtgagattgtctaaaatatcg 303  Q
    |||||||||||| |||||| ||||||||||    
T  54765615 atgagataagtgcgattgtataaaatatcg 54765644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 54764630 - 54764755
Alignment:
Q  13 tcatcaactaaaatgcacg-ggataaatggacattgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttcagaat 111  Q
    |||||||||||||| |||| || ||||||||| |||| |||||||| |||||||||| ||||||| ||| |||||  | |||||||| |||||||| |||    
T  54764630 tcatcaactaaaatacacgcgggtaaatggacgttgtttaaaatttcgtaaatatatcaaatgcatggg-agaagagggcattgacttaaatttcataat 54764728  T
Q  112 taactcatatgtacaagataaattgac 138  Q
    ||||||| ||||||||||||| |||||    
T  54764729 taactcaaatgtacaagataagttgac 54764755  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 175 - 303
Target Start/End: Original strand, 54764303 - 54764432
Alignment:
Q  175 tcatttataaaaaattgtttgtgataaaatatttaaac-atttagaatatcactttgcttcaattttacaatgatattgaattgtcatcaactaaaagac 273  Q
    ||||||||||| | |||||  ||||||||| |||| || || ||||||||||||| ||||||||| || |||||||||||| ||||||||||||||| ||    
T  54764303 tcatttataaatatttgttcctgataaaatgtttatactatctagaatatcacttcgcttcaattctataatgatattgaactgtcatcaactaaaatac 54764402  T
Q  274 atgagataagtgagattgtctaaaatatcg 303  Q
    | ||  |||||| |||||| ||||||||||    
T  54764403 acgatgtaagtgtgattgtataaaatatcg 54764432  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 54764047 - 54764141
Alignment:
Q  45 ttgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttcagaattaactcatatgtacaagataaattgacac 140  Q
    |||| |||||||| |||||||||||||||||| ||| ||||   | ||||||||||||||||| |||||||||| ||||||||||||| |||||||    
T  54764047 ttgtataaaatttcgtaaatatataaaatgcatggg-agaaaagggcattgactaaaatttcataattaactcaaatgtacaagataagttgacac 54764141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 79 - 225
Target Start/End: Original strand, 1317496 - 1317643
Alignment:
Q  79 gggagaagtagacattgactaaaatttcagaattaactcatatgtacaagataaattgacacggtat-aattaacttttgatacctgggataagttgtca 177  Q
    |||| |||||| ||||| ||||||||| |||||||||||| ||||| | ||||| ||||||| |  | || |||| |||||||| ||||| ||||| |||    
T  1317496 gggataagtaggcattgtctaaaattttagaattaactcaaatgtaaatgataagttgacactgactaaactaac-tttgatacatgggacaagttttca 1317594  T
Q  178 tttataaaaaattgtttgtgataaaatatttaaac-atttagaatatca 225  Q
    |||||| |||||||||  |||||||| ||||| || |||||||||||||    
T  1317595 tttatacaaaattgttgctgataaaacatttatactatttagaatatca 1317643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 268
Target Start/End: Original strand, 54764962 - 54765014
Alignment:
Q  216 tagaatatcactttgcttcaattttacaatgatattgaattgtcatcaactaa 268  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  54764962 tagaatatcacttcgcttcaattctacaatgatattgaattgtcatcaactaa 54765014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 54765239 - 54765303
Alignment:
Q  13 tcatcaactaaaatgcacggg-ataaatggacattgtctaaaattttgtaaatatataaaatgca 76  Q
    ||||||||||||||||||||| |||||||||| |||| |||||||| ||||||||||||||||||    
T  54765239 tcatcaactaaaatgcacggggataaatggacgttgtttaaaatttcgtaaatatataaaatgca 54765303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 54765800 - 54765913
Alignment:
Q  21 taaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttcagaattaactcata 120  Q
    ||||||||| ||||||||||||  ||||||||||| | ||||||| ||||||||||  ||||||||    |||||| ||||||||||||| ||||||| |    
T  54765800 taaaatgcatgggataaatggatgttgtctaaaatatcgtaaataaataaaatgca-tgggagaagcgagcattgagtaaaatttcagaagtaactcaaa 54765898  T
Q  121 tgtacaagataaatt 135  Q
    || ||  ||||||||    
T  54765899 tgcacgggataaatt 54765913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 1317867 - 1317939
Alignment:
Q  214 tttagaatatcactttgcttcaattttacaatgatattgaattgtcatcaactaaaagacatgagataagtga 286  Q
    |||||||||| || || ||| |||||||||||||||||||| | ||||||||||||| ||| || ||||||||    
T  1317867 tttagaatatgacattacttaaattttacaatgatattgaactatcatcaactaaaatacacgacataagtga 1317939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 54765342 - 54765393
Alignment:
Q  89 gacattgactaaaatttcagaattaactcatatgtacaagataaattgacac 140  Q
    ||||||||||||||||||| || ||||||| |||||| |||||| |||||||    
T  54765342 gacattgactaaaatttcataactaactcaaatgtactagataagttgacac 54765393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 49827595 - 49827637
Alignment:
Q  212 catttagaatatcactttgcttcaattttacaatgatattgaa 254  Q
    |||||||||||||||||  |||||||| |||||||||||||||    
T  49827595 catttagaatatcacttcacttcaattctacaatgatattgaa 49827637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 1317478 - 1317523
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaaatttt 58  Q
    ||||||||||||||||| ||||||| | | ||||||||||||||||    
T  1317478 tcatcaactaaaatgcatgggataagtaggcattgtctaaaatttt 1317523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 49827273 - 49827389
Alignment:
Q  15 atcaactaaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttcagaattaa 114  Q
    ||||||||||||||||||||||  ||  ||||| | ||| ||| ||| |||  | |||||||  || |||||| | ||||||||||||||| |||| |||    
T  49827273 atcaactaaaatgcacgggatatgtgagcattgacaaaagtttcgtatataggtgaaatgcatagg-agaagtgggcattgactaaaattttagaaataa 49827371  T
Q  115 ctcatatgtacaagataa 132  Q
    |||||||| ||| |||||    
T  49827372 ctcatatgcacatgataa 49827389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 4358573 - 4358617
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaaattt 57  Q
    |||| ||||||||||||||||||||||| |||||| |||| ||||    
T  4358573 tcataaactaaaatgcacgggataaatgaacattgactaatattt 4358617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 26060019 - 26059979
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaa 53  Q
    |||| ||||||||||||||||||||||| |||||| |||||    
T  26060019 tcataaactaaaatgcacgggataaatgaacattgactaaa 26059979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 4e-55; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 13 - 303
Target Start/End: Original strand, 1076502 - 1076794
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttcagaatt 112  Q
    ||||||||||||||||||| ||||||||||| |||||||||| || |||||||||||||||||| |||||||||| | || || ||||||||| ||||||    
T  1076502 tcatcaactaaaatgcacgagataaatggacgttgtctaaaaattcgtaaatatataaaatgca-ggggagaagtgggcaatgcctaaaattttagaatt 1076600  T
Q  113 aactcatatgtacaag---ataaattgaca-cggtataattaacttttgatacctgggataagttgtcatttataaaaaattgtttgtgataaaatattt 208  Q
    |||||| |||||||||   ||||||||||| ||    ||||||| |||||||||||| | |||||| |||||||||||| |||||  |||||||||||||    
T  1076601 aactcaaatgtacaagaaaataaattgacatcgactaaattaac-tttgatacctggaacaagttgccatttataaaaatttgttcatgataaaatattt 1076699  T
Q  209 aaac-atttagaatatcactttgcttcaattttacaatgatattgaattgtcatcaactaaaagacatgagataagtgagattgtctaaaatatcg 303  Q
    | || ||  | |||||||||| |||| |||||||||||||||| ||| |||||||||||||||   | ||||| ||||||||||| ||||||||||    
T  1076700 atactatccataatatcacttcgcttaaattttacaatgatatagaactgtcatcaactaaaatgaaagagat-agtgagattgtataaaatatcg 1076794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 175 - 303
Target Start/End: Original strand, 1077281 - 1077410
Alignment:
Q  175 tcatttataaaaaattgtttgtgataaaatatttaaac-atttagaatatcactttgcttcaattttacaatgatattgaattgtcatcaactaaaagac 273  Q
    ||||||||||| | |||||   |||||||| |||| || || ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| ||    
T  1077281 tcatttataaatatttgttccagataaaatgtttatactatctagaatatcacttcgcttcaattctacaatgatattgaactgtcatcaactaaaatac 1077380  T
Q  274 atgagataagtgagattgtctaaaatatcg 303  Q
    | ||| |||||| |||||| ||||||||||    
T  1077381 acgaggtaagtgtgattgtataaaatatcg 1077410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 216 - 303
Target Start/End: Original strand, 1077907 - 1077994
Alignment:
Q  216 tagaatatcactttgcttcaattttacaatgatattgaattgtcatcaactaaaagacatgagataagtgagattgtctaaaatatcg 303  Q
    ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| | | |||||||||| |||||| ||||||||||    
T  1077907 tagaatatcacttcgcttcaattctacaatgatattgaactgtcatcaactaaaatatacgagataagtgtgattgtataaaatatcg 1077994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 1077609 - 1077734
Alignment:
Q  13 tcatcaactaaaatgcacg-ggataaatggacattgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttcagaat 111  Q
    |||||||||||||| |||| |||||||||||| |||| ||||||||  ||||||||| ||||||| ||| ||||   | |||||||| |||||||| |||    
T  1077609 tcatcaactaaaatacacgcggataaatggacgttgtttaaaatttcataaatatatcaaatgcatggg-agaaaagggcattgacttaaatttcataat 1077707  T
Q  112 taactcatatgtacaagataaattgac 138  Q
    ||||||| ||||||||||||| |||||    
T  1077708 taactcaaatgtacaagataagttgac 1077734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 1076993 - 1077111
Alignment:
Q  13 tcatcaactaaaatgcacggg-ataaatggacattgtctaaaattttgtaaatatataaaatgcacggg-gagaagtagacattgactaaaatttcagaa 110  Q
    |||||||||||||| |||||| |||||| ||| |||| |||||||| ||||||||||||| |||| ||| ||||||  | ||||||||||||||||| ||    
T  1076993 tcatcaactaaaatacacggggataaatagacgttgtataaaatttcgtaaatatataaa-tgcatgggagagaag--ggcattgactaaaatttcataa 1077089  T
Q  111 ttaactcatatgtacaagataa 132  Q
    |||||||| ||||| |||||||    
T  1077090 ttaactcaaatgtataagataa 1077111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 1078149 - 1078245
Alignment:
Q  21 taaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttcagaattaactca 118  Q
    ||||||||| ||||||||||||  |||| |||||| | ||||||| ||||||||||  ||||||||  | |||||| ||||||||||||| |||||||    
T  1078149 taaaatgcatgggataaatggatgttgtttaaaatatcgtaaataaataaaatgca-tgggagaagcgggcattgagtaaaatttcagaagtaactca 1078245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 1077496 - 1077537
Alignment:
Q  146 aattaacttttgatacctgggataagttgtcatttataaaaa 187  Q
    |||||||||||||||| ||||| ||||||| |||||||||||    
T  1077496 aattaacttttgatacatgggagaagttgttatttataaaaa 1077537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 14 - 301
Target Start/End: Original strand, 27432971 - 27433269
Alignment:
Q  14 catcaactaaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttcagaatta 113  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |  |||||||||   |||| | |||||||||| |||||    
T  27432971 catcaactaaaatgcacgggataagtggacattgtctaaaatttcgtaaatatataaaatgta-tgggagaagtgagcattaattaaaatttcaaaatta 27433069  T
Q  114 actcatatgtacaagataaattgac-acggtataattaacttttgatacctgggataagttgtcatttat-----------aaaaaattgtttgtgataa 201  Q
    ||||| |||| |||||||||||||| | ||   ||||||| ||||||||   ||| ||||||||||||||           |||||| | ||  ||||||    
T  27433070 actcaaatgtccaagataaattgactatggctaaattaac-tttgatactcaggacaagttgtcatttatatataaaaaaaaaaaaactattcatgataa 27433168  T
Q  202 aatattta-aacatttagaatatcactttgcttcaattttacaatgatattgaattgtcatcaactaaaagacatgagataagtgagattgtctaaaata 300  Q
    |   |||| |   |||||||||||||||||||||||||  ||||||||||||| |  |||||||||||||  || ||||||| ||| |||||||||||||    
T  27433169 atcgtttatattgtttagaatatcactttgcttcaattcaacaatgatattgattcatcatcaactaaaatgcacgagataaatgaaattgtctaaaata 27433268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 27433988 - 27434104
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttcagaatt 112  Q
    ||||||||||||||||||||| |||||| |||||||||||||| ||||||||| ||||||||||  ||||||||| | |||||| |||||||||| || |    
T  27433988 tcatcaactaaaatgcacggg-taaatgtacattgtctaaaatattgtaaataaataaaatgca-tgggagaagtgggcattgagtaaaatttcataagt 27434085  T
Q  113 aactcatatgtacaagata 131  Q
    |||||| ||| ||| ||||    
T  27434086 aactcaaatgcacatgata 27434104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 13549404 - 13549512
Alignment:
Q  15 atcaactaaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttcagaattaa 114  Q
    ||||||||||||||| ||||||||||||||||||||| ||| | ||||||| ||||||||||  | ||||||| | |||| |||| ||||||| ||| ||    
T  13549404 atcaactaaaatgcatgggataaatggacattgtctataatatcgtaaataaataaaatgca-tgagagaagtgggcatttactataatttcaaaatcaa 13549502  T
Q  115 ctcatatgta 124  Q
     |||||||||    
T  13549503 ttcatatgta 13549512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 27433224 - 27433328
Alignment:
Q  11 catcatcaactaaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttcagaa 110  Q
    ||||||||||||||||||||| ||||||| || |||||||||||| ||||||||| ||||||||||    || ||| | ||||||||||| |||||||||    
T  27433224 catcatcaactaaaatgcacgagataaat-gaaattgtctaaaatattgtaaataaataaaatgca--aagataagcaaacattgactaagatttcagaa 27433320  T
Q  111 ttaactca 118  Q
     |||||||    
T  27433321 gtaactca 27433328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 270
Target Start/End: Original strand, 43250540 - 43250642
Alignment:
Q  169 aagttgtcatttataaaaaattgtttgtgataaaatatttaaac-atttagaatatcactttgcttcaattttacaatgatattgaattgtcatcaacta 267  Q
    |||||||||||||||||||||||||  || |||||| |||  || |||||||||||||| |  |||||||| ||||| ||||| |||   ||||||||||    
T  43250540 aagttgtcatttataaaaaattgttcttgctaaaatgtttctactatttagaatatcacctcacttcaattctacaaagatatcgaaccttcatcaacta 43250639  T
Q  268 aaa 270  Q
    |||    
T  43250640 aaa 43250642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 13549603 - 13549675
Alignment:
Q  214 tttagaatatcactttgcttcaattttacaatgatattgaattgtcatcaactaaaagacatgagataagtga 286  Q
    |||||||||||||    |||||||| || |||||||||||||  ||||| ||||||| ||||| |||||||||    
T  13549603 tttagaatatcaccacacttcaattctaaaatgatattgaatcatcatcgactaaaatacatgggataagtga 13549675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 120 - 303
Target Start/End: Original strand, 54960791 - 54960975
Alignment:
Q  120 atgtacaagataaattgacacggtataa-ttaacttttgatacctgggataagttgtcatttataaaaaattgtttgtgataaaatatttaaac-attta 217  Q
    |||||||||||||| |||||| |  ||| |||||||| |||||||  || |||||||||||||||||| ||||||| ||||||||  |||| || |||||    
T  54960791 atgtacaagataaaatgacactgactaaattaacttt-gatacctaagacaagttgtcatttataaaatattgtttatgataaaacgtttatactattta 54960889  T
Q  218 gaatatcactttgcttcaattttacaatgatattgaattgtcatcaactaaaagacatgagataagtgagattgtctaaaatatcg 303  Q
    ||||||||| ||||| ||||| || |||||||||||| |||||||||||||||  ||  | ||||||||||||||||| |||||||    
T  54960890 gaatatcaccttgctccaattctataatgatattgaactgtcatcaactaaaatgcacaatataagtgagattgtctataatatcg 54960975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 54962274 - 54962392
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttcagaatt 112  Q
    ||||||||||||||| |||  |||||||||||||||||| |||||||||||||  |||||||||  | ||||||| | |||| || ||||||||| || |    
T  54962274 tcatcaactaaaatgaacgatataaatggacattgtctacaattttgtaaataactaaaatgca-tgagagaagtgggcattaacaaaaatttcaaaagt 54962372  T
Q  113 aactcatatgtacaagataa 132  Q
    |||||| |||||| ||||||    
T  54962373 aactcaaatgtacgagataa 54962392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 97 - 270
Target Start/End: Original strand, 54962554 - 54962728
Alignment:
Q  97 ctaaaatttcagaattaactcatatgtacaagataaattgacacggtat-aattaacttttgatacctgggataagttgtcatttataaaaaattgtttg 195  Q
    |||||||||||||||||||||| |||||||||||||| |||||| |  | ||||||| ||||||||  |||| | |||||||||||| ||||||  ||      
T  54962554 ctaaaatttcagaattaactcaaatgtacaagataaactgacaccgactaaattaac-tttgatacacgggacatgttgtcatttattaaaaataattct 54962652  T
Q  196 tgataaaatatttaaac-atttagaatatcactttgcttcaattttacaatgatattgaattgtcatcaactaaaa 270  Q
    | ||||||  |||  || || ||||||||||| |  |||||||| |||||||| ||||| | ||||||||||||||    
T  54962653 taataaaacgtttgtactatgtagaatatcacctcacttcaattctacaatgacattgattcgtcatcaactaaaa 54962728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 54961336 - 54961399
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgca 76  Q
    ||||||||||||||||| ||||||||||||||||||||| ||  | ||||||| ||||||||||    
T  54961336 tcatcaactaaaatgcatgggataaatggacattgtctataacatcgtaaataaataaaatgca 54961399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 54962236 - 54962286
Alignment:
Q  220 atatcactttgcttcaattttacaatgatattgaattgtcatcaactaaaa 270  Q
    ||||||| ||||||||||| |||||||||||||||  ||||||||||||||    
T  54962236 atatcaccttgcttcaattctacaatgatattgaaccgtcatcaactaaaa 54962286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 54960930 - 54961047
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttcagaatt 112  Q
    ||||||||||||||||||   |||| || | |||||||| ||| | ||||||| |||||||||||||| | ||   | |||||||||||||||||||| |    
T  54960930 tcatcaactaaaatgcacaatataagtg-agattgtctataatatcgtaaataaataaaatgcacgggaaaaacggg-cattgactaaaatttcagaagt 54961027  T
Q  113 aactcatatgtacaagataa 132  Q
    |||||| ||| || ||||||    
T  54961028 aactcaaatgcacgagataa 54961047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 286
Target Start/End: Original strand, 54961932 - 54962005
Alignment:
Q  213 atttagaatatcactttgcttcaattttacaatgatattgaattgtcatcaactaaaagacatgagataagtga 286  Q
    |||||||||||||| |  |||||||| |||||||| ||||||   ||||| ||||||| ||||| |||||||||    
T  54961932 atttagaatatcacatcacttcaattctacaatgacattgaaccatcatcgactaaaatacatgggataagtga 54962005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 18122469 - 18122513
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaaattt 57  Q
    |||| ||||||||||||||||||||||| |||||| |||| ||||    
T  18122469 tcataaactaaaatgcacgggataaatgaacattgactaatattt 18122513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 36032342 - 36032302
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaa 53  Q
    |||| ||||||||||||||||||||||| |||||| |||||    
T  36032342 tcataaactaaaatgcacgggataaatgaacattgactaaa 36032302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 154 - 303
Target Start/End: Complemental strand, 10793 - 10643
Alignment:
Q  154 tttgatacctgggataagttgtcatttataaaaaattgtttgtgataaaatatttaaac-atttagaatatcactttgcttcaattttacaatgatattg 252  Q
    |||||||||||  | ||||||| ||||||||||| ||| |  ||||||||| |||| || || ||||||||||||| ||||||||| |||||||||||||    
T  10793 tttgatacctgaaacaagttgttatttataaaaatttgctcctgataaaatgtttatactatctagaatatcacttcgcttcaattctacaatgatattg 10694  T
Q  253 aattgtcatcaactaaaagacatgagataagtgagattgtctaaaatatcg 303  Q
    || ||||||||||||||| ||| ||||| |||| |||||| ||||||||||    
T  10693 aactgtcatcaactaaaatacacgagatgagtgggattgtataaaatatcg 10643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 11352 - 11228
Alignment:
Q  13 tcatcaactaaaatgcacggg-ataaatggacattgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttcagaat 111  Q
    ||||||||||||||| | ||| ||||||||||| ||| ||||||||  ||||||||||||||||| ||| ||||   | |||||||| |||||||| |||    
T  11352 tcatcaactaaaatgtaaggggataaatggacaatgtttaaaatttcataaatatataaaatgcatggg-agaaaagggcattgactcaaatttcataat 11254  T
Q  112 taactcatatgtacaagataaattga 137  Q
    ||||||| ||||||||||||| ||||    
T  11253 taactcaaatgtacaagataagttga 11228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 10688 - 10564
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttcagaatt 112  Q
    |||||||||||||| |||| ||| | |||  ||||| |||||| | ||||||| ||||||||||  |  |||||   |||||||| ||||||||| || |    
T  10688 tcatcaactaaaatacacgagatgagtggg-attgtataaaatatcgtaaataaataaaatgcataga-agaagcgaacattgacaaaaatttcaaaagt 10591  T
Q  113 aactcatatgtacaagataaattgaca 139  Q
    |||||| ||||||||||||| ||||||    
T  10590 aactcaaatgtacaagataagttgaca 10564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 11394 - 11340
Alignment:
Q  216 tagaatatcactttgcttcaattttacaatgatattgaattgtcatcaactaaaa 270  Q
    ||||||||||||| ||||||||| |||||||||||| ||   |||||||||||||    
T  11394 tagaatatcacttcgcttcaattctacaatgatattaaacattcatcaactaaaa 11340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 20201248 - 20201311
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgca 76  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||    
T  20201248 tcatcaactaaaatgcacggaataaatggacattgtctaaaattttgtaaataactaaaatgca 20201311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 172 - 254
Target Start/End: Original strand, 30219122 - 30219205
Alignment:
Q  172 ttgtcatttataaaaaattgtttgtgataaaatatttaaac-atttagaatatcactttgcttcaattttacaatgatattgaa 254  Q
    ||||||||||||||||||||||  || |||||| |||| || ||||||||||||||||  ||||| || |||||| ||||||||    
T  30219122 ttgtcatttataaaaaattgttcatgttaaaatgtttatactatttagaatatcacttcacttcatttctacaattatattgaa 30219205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 287
Target Start/End: Original strand, 20202299 - 20202417
Alignment:
Q  169 aagttgtcatttataaaaaattgtttgtgataaaatatttaaac-atttagaatatcactttgcttcaattttacaatgatattgaattgtcatcaacta 267  Q
    ||||||||||| ||||||| |||||  ||||||||  |||| || || ||||||||||| ||| ||||||| || ||||||||||||   |||| |||||    
T  20202299 aagttgtcattaataaaaa-ttgttcttgataaaacgtttacactatctagaatatcacattgattcaattctagaatgatattgaaccctcataaacta 20202397  T
Q  268 aaagacatgagataagtgag 287  Q
    ||| ||| || |||||||||    
T  20202398 aaatacacgaaataagtgag 20202417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 20201203 - 20201260
Alignment:
Q  213 atttagaatatcactttgcttcaattttacaatgatattgaattgtcatcaactaaaa 270  Q
    |||||||||||||| | |||||||||  ||||||| |||||| | |||||||||||||    
T  20201203 atttagaatatcacctcgcttcaattcgacaatgacattgaactctcatcaactaaaa 20201260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 30219566 - 30219607
Alignment:
Q  213 atttagaatatcactttgcttcaattttacaatgatattgaa 254  Q
    ||||||||||||||||  |||||||| |||||||||||||||    
T  30219566 atttagaatatcacttcacttcaattctacaatgatattgaa 30219607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 4291445 - 4291405
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaa 53  Q
    |||| ||||||||||||||||||||||| |||||| |||||    
T  4291445 tcataaactaaaatgcacgggataaatgaacattgactaaa 4291405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 22522028 - 22522116
Alignment:
Q  15 atcaactaaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttc 106  Q
    ||||||||||||| |||  |||| | |||||||  |||||||  ||| ||| || ||||||||||| |||||||| ||||||||||||||||    
T  22522028 atcaactaaaatgtacgacataagtagacattgaataaaatt--gtagatagattaaatgcacggg-agaagtaggcattgactaaaatttc 22522116  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 37398410 - 37398450
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaa 53  Q
    |||| ||||||||||||||||||||||| |||||| |||||    
T  37398410 tcataaactaaaatgcacgggataaatgaacattgactaaa 37398450  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 41778155 - 41778195
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaa 53  Q
    |||| ||||||||||||||||||||||| |||||| |||||    
T  41778155 tcataaactaaaatgcacgggataaatgaacattgactaaa 41778195  T

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Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 30696254 - 30696191
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgca 76  Q
    ||||||||||||||||||||||||| || | ||||||||||||||||||||||  |||||||||    
T  30696254 tcatcaactaaaatgcacgggataagtgcatattgtctaaaattttgtaaataactaaaatgca 30696191  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 30696007 - 30695946
Alignment:
Q  15 atcaactaaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgca 76  Q
    |||||| |||||||||||||||||||||||||||||| ||| | ||||||| ||||||||||    
T  30696007 atcaaccaaaatgcacgggataaatggacattgtctataatatcgtaaataaataaaatgca 30695946  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 5324034 - 5324086
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaaattttgtaaata 65  Q
    |||| ||||||||||||||||||||||| |||||||||||||| ||| |||||    
T  5324034 tcattaactaaaatgcacgggataaatgaacattgtctaaaatattgaaaata 5324086  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 299
Target Start/End: Complemental strand, 30696344 - 30696212
Alignment:
Q  169 aagttgtcatttataaaaaattgtttgtgataaaatatttaaac-atttagaatatcactttgcttcaattttacaatgatattgaattgtcatcaacta 267  Q
    ||||| ||||||||||||||||| |  ||| |||| ||||| |  ||||| |||||||| | ||||||||| |||||||| | ||||  |||||||||||    
T  30696344 aagttttcatttataaaaaattgatcttgagaaaacatttatattatttataatatcacgtcgcttcaattctacaatgacagtgaaccgtcatcaacta 30696245  T
Q  268 aaagacatgagataagtg-agattgtctaaaat 299  Q
    |||  || | |||||||| | ||||||||||||    
T  30696244 aaatgcacgggataagtgcatattgtctaaaat 30696212  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 18754352 - 18754290
Alignment:
Q  18 aactaaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgcacggg 80  Q
    ||||||||||||||||||||||| |||||| ||||| |||   ||||| ||||||| ||||||    
T  18754352 aactaaaatgcacgggataaatgaacattgactaaactttcagaaataaataaaatacacggg 18754290  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 5323788 - 5323892
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttcagaatt 112  Q
    |||| ||||| |||| ||||||||  |||  ||||||||||||||||||| ||  |||||||||  ||||||||| | ||||||| |||| |||| || |    
T  5323788 tcattaactataatggacgggatacgtgggaattgtctaaaattttgtaactaactaaaatgca-tgggagaagtgggcattgacaaaaaattcaaaagt 5323886  T
Q  113 aactca 118  Q
    ||||||    
T  5323887 aactca 5323892  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 30693394 - 30693293
Alignment:
Q  154 tttgatacctgggataagttgtcatttataaaaaattgtttgtgataaaatatttaaac-atttagaatatcactttgcttcaattttacaatgatattg 252  Q
    ||||||||  |||| || || |||||||||||||||||||  |||||||   |||| || |||||||||||||| | ||||||||| || |||| |||||    
T  30693394 tttgatacgcgggacaaattctcatttataaaaaattgttcttgataaagcgtttatactatttagaatatcacatcgcttcaattctaaaatggtattg 30693295  T
Q  253 aa 254  Q
    ||    
T  30693294 aa 30693293  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 5323007 - 5323098
Alignment:
Q  24 aatgcacgggataaatggacattgtctaaaattttgtaaatatataaaatgcacggggagaagtagacattgactaaaatttcagaattaact 116  Q
    ||||||||||||||||| ||||||| ||  || |  |||||| ||||||||||  ||||||||  | |||||||||||| |||| ||||||||    
T  5323007 aatgcacgggataaatgaacattgtttactatatcataaataaataaaatgca-tgggagaagcgggcattgactaaaagttcaaaattaact 5323098  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 164 - 267
Target Start/End: Original strand, 5324535 - 5324638
Alignment:
Q  164 gggataagttgtcatttataaaaaattgtttgtgataaaatatttaaac-atttagaatatcactttgcttcaattttacaatgatattgaattgtcatc 262  Q
    |||||||||||||||||| ||||  ||||| ||||||||   |||| || ||||||| |||||  |  ||||||||||| |||||||||||||  |||||    
T  5324535 gggataagttgtcatttacaaaat-ttgttcgtgataaagcgtttatactatttagagtatcatctcacttcaattttaaaatgatattgaatcctcatc 5324633  T
Q  263 aacta 267  Q
    |||||    
T  5324634 aacta 5324638  T

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Target: scaffold0517 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 9238 - 9198
Alignment:
Q  13 tcatcaactaaaatgcacgggataaatggacattgtctaaa 53  Q
    |||| ||||||||||||||||||||||| |||||| |||||    
T  9238 tcataaactaaaatgcacgggataaatgaacattgactaaa 9198  T

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