View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18887_low_21 (Length: 319)
Name: NF18887_low_21
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 305
Target Start/End: Complemental strand, 46304690 - 46304396
Alignment:
| Q |
11 |
gtcaaaacagaagtctagaataaacttagtacatatnnnnnnnnttaaatatgacagggcttgattactcacaagtaccacaaaccagataattggcaaa |
110 |
Q |
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| T |
46304690 |
gtcaaaacagaagtccagaataaacttagtacatataaaaaaaattaaatatgacagggcttgattactcacaagtaccacaaaccagataattggcaaa |
46304591 |
T |
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| Q |
111 |
tatccggagacaaaattccagtcaacatattccctcgcaatccactgtatcattgtgcaaaacataccacaactgaaatattagaaatatccaagttata |
210 |
Q |
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| T |
46304590 |
tatccggagacaaaattccagtcaacatattccctcgcaatccactgtatcattgtgcaaaacataccacaactgaaatattagaaatatccaagttata |
46304491 |
T |
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| Q |
211 |
atgtataatgtacattataaaagaaaggtaacctacaggtattgcaatacttcattccaatagagtagccttggtatctctcctatgagcttatt |
305 |
Q |
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| T |
46304490 |
atgtataatgtacattataaaagaaaggtaacctacaggtattgcaatacttcattccaatagagtagccttggtatctctcctatgagcttatt |
46304396 |
T |
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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 26377209 - 26377138
Alignment:
| Q |
83 |
aagtaccacaaaccagataattggcaaatatccggagacaaaattccagtcaacatattccctcgcaatcca |
154 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||| |||| ||||||| ||||||||||||||| |
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| T |
26377209 |
aagtaccacaaactagataattggcaaatatcaggagacaaaaatccaatcaacatgttccctcgcaatcca |
26377138 |
T |
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