View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18887_low_27 (Length: 268)
Name: NF18887_low_27
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 2 - 252
Target Start/End: Original strand, 23747562 - 23747812
Alignment:
| Q |
2 |
tgaatattttcagcacttttctttttaattcctttctagacgttaaactaaaccattatgtgtttgactcagcgttagcaaacttgattttagatgaact |
101 |
Q |
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| T |
23747562 |
tgaatattttcagcacttttctttttaactcctttctagacgttaaactaaaccattatgtgtttggctcagcgttagcaaacttgattttagatgaact |
23747661 |
T |
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| Q |
102 |
tgattttcaaaattgattttagttgaaagtgaatatagattggagtgagtggtccatgttcaaaaacttttatttcaaaattagttaaaagtctgaaaat |
201 |
Q |
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| T |
23747662 |
ttattttcaaaattgattttagttgaaagtgaatatagattggagtgagtggtccatgtttgaaaacttttatttcaaaattagttaaaagtctgaaaat |
23747761 |
T |
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| Q |
202 |
ttcaactcagtgcaaaaactacatttttaacaatcaatgtagggatgcatc |
252 |
Q |
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| T |
23747762 |
ttcaactaagtgcaaaaactacatttttaacaatcaatgtagggatgcatc |
23747812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 176
Target Start/End: Original strand, 23679343 - 23679444
Alignment:
| Q |
75 |
gttagcaaacttgattttagatgaacttgattttcaaaattgattttagttgaaagtgaatatagat-tggagtgagtggtccatgttcaaaaactttta |
173 |
Q |
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| T |
23679343 |
gttagcaaactttattttaaatgaatttgattttcgaaattgatttcagttgaaactgagtat-gatgtggagtgagtgattcatgtttgaaaactttta |
23679441 |
T |
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| Q |
174 |
ttt |
176 |
Q |
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||| |
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| T |
23679442 |
ttt |
23679444 |
T |
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