View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18887_low_28 (Length: 263)
Name: NF18887_low_28
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_low_28 |
 | |
|
| [»] scaffold0212 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 31307038 - 31307251
Alignment:
| Q |
18 |
attaggtgcaataagatggcccttagcaatgaatgtttaaacaagattatttctttctttaggggagccaaaagagcagctaaaaataatgaagagaata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31307038 |
attaggtgcaataagatggcccttagcaatgaatgtttaaacaagattatttctttctttacgggagccaaaagagcagctaaaaataatgaagagaata |
31307137 |
T |
|
| Q |
118 |
gcatagtatgtgaggcatctcattatatttatatgagaaatgtatggtttgggctcctgatttcctaattatttaaggaatgaatttttaaccattatta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31307138 |
gcatagtatgtgaggcatctcattatatttatatgagaaatgtatggtttggactcctgatttcctaattatttaa-gaatgaatttttaaccattatta |
31307236 |
T |
|
| Q |
218 |
gcctacttgacaaca |
232 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
31307237 |
gcctacttgacaaca |
31307251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 31363773 - 31363813
Alignment:
| Q |
23 |
gtgcaataagatggcccttagcaatgaatgtttaaacaaga |
63 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
31363773 |
gtgcaataagatggcccatagcaatgaatgtttaaataaga |
31363813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0212 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 1919 - 1961
Alignment:
| Q |
23 |
gtgcaataagatggcccttagcaatgaatgtttaaacaagatt |
65 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||| |||||| |
|
|
| T |
1919 |
gtgcaataagacggcccatagcaatgaatgtttaaataagatt |
1961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University