View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18887_low_4 (Length: 528)
Name: NF18887_low_4
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 148 - 513
Target Start/End: Complemental strand, 31711589 - 31711223
Alignment:
| Q |
148 |
ataaaattac-tagaaggtaccaaaaataccaaattaaaacattatctatggagtttcttttaatatttctacatttttaccttcaacaaaattgcatct |
246 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
31711589 |
ataaaattacgtagagggtaccaaaaataccaaattaaaacattatctatggagtttctcttaatatttcaacatttttaccttcaacaaaattgcatct |
31711490 |
T |
|
| Q |
247 |
gctggtggaattcccttaaacatgtctccaccaacataacttagattttcacttccttgcaagccatcaacaacatgtgggagatcaaacacaatacact |
346 |
Q |
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|||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
31711489 |
gctggtggaatttccttaaacatgtctccaccaacatatcttagcttttcacttccttgcaagccatcaacaacatgtggaagatcaaacacaatgcact |
31711390 |
T |
|
| Q |
347 |
ccatttgtgggaatgatttggcaagagtctttgccatggtccccgtacctcctccaacatcaaccaatgactcaacttcattgaacactcccttgcattt |
446 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31711389 |
ccatttgtgggaatgatttgacaagagtctttgccatggtccccgtacctcctccaacatcaaccaatgactcaacttcattgaacactcccttgcattt |
31711290 |
T |
|
| Q |
447 |
ctcaaccaacaaatcggaaactaatcgagtatcatttgccattgactcgttaaataagttgttaatt |
513 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31711289 |
ctcaaccaacaaatcagaaactaatcgagtatcatttgccattgactcgttaaataagttgttaatt |
31711223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 223 - 511
Target Start/End: Complemental strand, 31734919 - 31734631
Alignment:
| Q |
223 |
tttaccttcaacaaaattgcatctgctggtggaattcccttaaacatgtctccaccaacataacttagattttcacttccttgcaagccatcaacaacat |
322 |
Q |
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||||||||||||| ||||||||| | ||| |||||| | ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| |
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| T |
31734919 |
tttaccttcaacagaattgcatcggttggcggaatttctttaaacatgtctccaccaacatagcttagattctcacttccttgcaaaccatcaacaacat |
31734820 |
T |
|
| Q |
323 |
gtgggagatcaaacacaatacactccatttgtgggaatgatttggcaagagtctttgccatggtccccgtacctcctccaacatcaaccaatgactcaac |
422 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||| || |||||||||||||||||||||||||||| |
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| T |
31734819 |
gtggtagatcaaacacaatgcactccatttgtgggaatgatttggcaaaagtctttgccatagtccctgttcctcctccaacatcaaccaatgactcaaa |
31734720 |
T |
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| Q |
423 |
ttcattgaacactcccttgcatttctcaaccaacaaatcggaaactaatcgagtatcatttgccattgactcgttaaataagttgttaa |
511 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||||||||| |
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| T |
31734719 |
ttcattgaacactcccttgcacttctcaaccaacaaattggaaactaattgagcatcatttgccattgactcattaaataagttgttaa |
31734631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 224 - 513
Target Start/End: Complemental strand, 31684539 - 31684250
Alignment:
| Q |
224 |
ttaccttcaacaaaattgcatctgctggtggaattcccttaaacatgtctccaccaacataacttagattttcacttccttgcaagccatcaacaacatg |
323 |
Q |
| |
|
|||||||||||||||||||| ||| ||| |||||| | ||||||||||||||||||||||| ||| |||||||||||| |||| |||||||||||||| |
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| T |
31684539 |
ttaccttcaacaaaattgcagctgttggcggaatttctttaaacatgtctccaccaacatagtttaagttttcacttcctagcaaaccatcaacaacatg |
31684440 |
T |
|
| Q |
324 |
tgggagatcaaacacaatacactccatttgtgggaatgatttggcaagagtctttgccatggtccccgtacctcctccaacatcaaccaatgactcaact |
423 |
Q |
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||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
31684439 |
tggaagatcaaatacaatgcactccatttgtgggaatgatttggcaagagtttttgccatggtccctgtacctcctccaacatcaaccaatgactcgact |
31684340 |
T |
|
| Q |
424 |
tcattgaacactcccttgcatttctcaaccaacaaatcggaaactaatcgagtatcatttgccattgactcgttaaataagttgttaatt |
513 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||||||||||| |
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| T |
31684339 |
tcattgaacactcccttgcacttctcaaccaacaaatcggaaactaatcgagtttcttttgccattgattcgttaaatgagttgttaatt |
31684250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 222 - 507
Target Start/End: Complemental strand, 31703080 - 31702795
Alignment:
| Q |
222 |
ttttaccttcaacaaaattgcatctgctggtggaattcccttaaacatgtctccaccaacataacttagattttcacttccttgcaagccatcaacaaca |
321 |
Q |
| |
|
|||||||||||||||||| || |||| ||| |||||| | ||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||| |
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| T |
31703080 |
ttttaccttcaacaaaatggcgtctgttggaggaatttctttaaacatgtctccaccaacatagtttagattctcactaccttgcaagccatcaacaaca |
31702981 |
T |
|
| Q |
322 |
tgtgggagatcaaacacaatacactccatttgtgggaatgatttggcaagagtctttgccatggtccccgtacctcctccaacatcaaccaatgactcaa |
421 |
Q |
| |
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||||| |||||||| ||| || |||||||||||||||||||||| ||||| | ||||||||||||||| || || ||||||||||||||||||||||| | |
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| T |
31702980 |
tgtggtagatcaaatacactaaactccatttgtgggaatgatttagcaagggcctttgccatggtccctgtgccacctccaacatcaaccaatgactcca |
31702881 |
T |
|
| Q |
422 |
cttcattgaacactcccttgcatttctcaaccaacaaatcggaaactaatcgagtatcatttgccattgactcgttaaataagttg |
507 |
Q |
| |
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||||||| |||||| |||| ||||||| |||||||| || ||||||||||||||| ||||||| ||||| || ||||||||| |
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| T |
31702880 |
acccattgaatactcccctgcacttctcaatcaacaaattggtcactaatcgagtatcacttgccatggactcattgaataagttg |
31702795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 223 - 437
Target Start/End: Complemental strand, 31714482 - 31714268
Alignment:
| Q |
223 |
tttaccttcaacaaaattgcatctgctggtggaattcccttaaacatgtctccaccaacataacttagattttcacttccttgcaagccatcaacaacat |
322 |
Q |
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||||||||||||||||| ||||| ||||| ||||||| ||||||||| |||||||||||||| ||| || |||| ||||||||||||||||||||||| |
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| T |
31714482 |
tttaccttcaacaaaatagcatcagctggaggaattctcttaaacatatctccaccaacatagtttaagttatcacctccttgcaagccatcaacaacat |
31714383 |
T |
|
| Q |
323 |
gtgggagatcaaacacaatacactccatttgtgggaatgatttggcaagagtctttgccatggtccccgtacctcctccaacatcaaccaatgactcaac |
422 |
Q |
| |
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|||| |||||||||||| | ||||| | ||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||| || | |
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| T |
31714382 |
gtggaagatcaaacacagtgcactctaattgtgggaatgatttggcaagagcctttgccatggtccctgtgcctcctccaacatcaaccaatgattccaa |
31714283 |
T |
|
| Q |
423 |
ttcattgaacactcc |
437 |
Q |
| |
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| ||||||||||||| |
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| T |
31714282 |
tccattgaacactcc |
31714268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 30570458 - 30570360
Alignment:
| Q |
264 |
aaacatgtctccaccaacataacttagattttcacttccttgcaagccatcaacaacatgtgggagatcaaacacaatacactccatttgtgggaatga |
362 |
Q |
| |
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||||||||| || |||||||| ||| |||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||| || | ||||||||| |
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| T |
30570458 |
aaacatgtcacctccaacatattttaagttttcacttccttgtaagccatcaacaacatgtggaagatcaaatacaatgcactcaatgtttgggaatga |
30570360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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