View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18887_low_5 (Length: 502)
Name: NF18887_low_5
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 19343606 - 19344092
Alignment:
| Q |
1 |
aacaattgaaaagcatggagggaaggtggcaaactctatcattggtaatgtgatagaattttcttttttcatccttctgttgctaggaatttctataacc |
100 |
Q |
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| T |
19343606 |
aacaattgaaaagcatggagggaaggtggcaaactctatcattggtaatgtaatagaattttctattttcatccttctgttgctaggaatttctgtaacc |
19343705 |
T |
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| Q |
101 |
tggttagtcaaatttttcaggagcaagttgtttggtggcttcacctgccgagcgagatcgaggtggaacatccaaacttgcagatgccatgtaagtgtaa |
200 |
Q |
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| T |
19343706 |
tggttagttaaatttttcaggagcaagttgtttggtggcttcacctgccgagcgagatcgaggtggaacatccaaacttgcagatgccatgtaagtgtaa |
19343805 |
T |
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| Q |
201 |
tcaaaatttatggcatgacaataagaaaaacatggtcacatagaaaagatgcatctatataaacttttttggctttcaattttattctgatggcatgaaa |
300 |
Q |
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| T |
19343806 |
tcaaaatttatggcatgacaataagaaaaacatggtcacatagaaaagatgcatctatattaacttttttggctttcaattttattctgatggcatgaaa |
19343905 |
T |
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| Q |
301 |
aaggatacataaacatgcttaagtaactttcaacctatcttactatagggagaggggcatacctgtggttagggaggcatggttaaccgatagcatcgaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19343906 |
aaggatacataaacatgcttaagtaactttcaacctatcttactatagggagaggggcatacctgtggttagggaggcatggttaaccgacagcatcgaa |
19344005 |
T |
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| Q |
401 |
aagcaagaaccacaacctttagaatcttatgatcttgtttctgatctttctgtggatggaaagggaatcccttgggacaaacaagat |
487 |
Q |
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| T |
19344006 |
aagcaagaaccacaacctttagaatcttatgatcttgtttctgatctttctgtggatggaaagggaatcccttgggacaaacaagat |
19344092 |
T |
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