View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18887_low_6 (Length: 495)
Name: NF18887_low_6
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18887_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 31712176 - 31712659
Alignment:
| Q |
1 |
tctctttcagttatacaatattcccaattgcataaaattataaaaatgtcattcattatgagacaaaaggaatagtaacaaagaacaaattgtagaactc |
100 |
Q |
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||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31712176 |
tctctttcacttgtacaaacttcccaattgcataaaattataaaaatgtcattcattatgagacaaaaggaatagtaacaaagaacaaattgtagaactc |
31712275 |
T |
|
| Q |
101 |
ctacattttttatgtcttaacccatgccactttaccactcattcgaggacaagtccattctactcctaccctagtccacttctcctacattttaataatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31712276 |
ctacattttttatgtcttaacccatgccactttaccactcattcgaggacaagtccattctactcctaccctagtccacttctcctacattttaataatc |
31712375 |
T |
|
| Q |
201 |
gtcccatcatattctccttatacttgatcttctttttcacattaggttattctcttttgtttatctttctttcataactcaaacaaagttttaatgaaat |
300 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31712376 |
gtcccatcatattctccttatactttatcttctttt-cacattaggttattctcttttgtttatctttctttcataactcaaacaaagtcttaatgaaat |
31712474 |
T |
|
| Q |
301 |
tgcagtggatattgcatgattggaacgacgagcaatgtttgaagattttaaagaattgtaaggatgcaatatcaaagaaaggtaaagaaggaaaggtagt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31712475 |
tgcagtggatattgcatgattggaacgacgagcaatgtttgaagattttaaagaattgtaaggatgcaatatcaaagaaaggtaaagaaggaaaggtagt |
31712574 |
T |
|
| Q |
401 |
tatcatagacatggtgttagattgtgagaaaggagacaataatgaatcagttgaaacacaactcttctttgatatgttgatgatg |
485 |
Q |
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| T |
31712575 |
tatcatagacatggtgttagattgtgagaagggagacaataatgaatcagttgaaacacaactcttctttgatatgttgatgatg |
31712659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 242 - 485
Target Start/End: Original strand, 31735362 - 31735605
Alignment:
| Q |
242 |
ttaggttattctcttttgtttatctttctttcataactcaaacaaagttttaatgaaattgcagtggatattgcatgattggaacgacgagcaatgtttg |
341 |
Q |
| |
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|||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||| ||||| || |
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| T |
31735362 |
ttagtttattctcttttgcttatctttctttcataactcaaacaaagtcttaatgaaattgtagtggatattgcatgactggaatgacgaagaatgtgtg |
31735461 |
T |
|
| Q |
342 |
aagattttaaagaattgtaaggatgcaatatcaaagaaaggtaaagaaggaaaggtagttatcatagacatggtgttagattgtgagaaaggagacaata |
441 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31735462 |
aagatattaaagaattgtaaggatgcaatatcaaagaaaggtaaagaaggaaaggtagttatcatagacatggtgttagattgtgagaagggagacaata |
31735561 |
T |
|
| Q |
442 |
atgaatcagttgaaacacaactcttctttgatatgttgatgatg |
485 |
Q |
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| T |
31735562 |
atgaatcggttgaaacaaaactcttctttgatatgttgatgatg |
31735605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 250 - 485
Target Start/End: Original strand, 31684699 - 31684934
Alignment:
| Q |
250 |
ttctcttttgtttatctttctttcataactcaaacaaagttttaatgaaattgcagtggatattgcatgattggaacgacgagcaatgtttgaagatttt |
349 |
Q |
| |
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||||||||| | |||| ||||||||||||||||||| ||| || |||||||| ||||||||||||||||||||||| |||||| ||||| | ||||| || |
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| T |
31684699 |
ttctcttttctctatccttctttcataactcaaacatagtcttgatgaaattacagtggatattgcatgattggaatgacgaggaatgtgtaaagatatt |
31684798 |
T |
|
| Q |
350 |
aaagaattgtaaggatgcaatatcaaagaaaggtaaagaaggaaaggtagttatcatagacatggtgttagattgtgagaaaggagacaataatgaatca |
449 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | |||| ||| || || ||||||| ||| ||| |||||||||| |
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| T |
31684799 |
aaagaattgtaaggatgcaatatcaaagaaaggtaaagaagggaaggtggttatcttcgacaaggttttcgacagtgagaagggaaacattaatgaatca |
31684898 |
T |
|
| Q |
450 |
gttgaaacacaactcttctttgatatgttgatgatg |
485 |
Q |
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||||||||||||||||||||||||||||| |||||| |
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| T |
31684899 |
gttgaaacacaactcttctttgatatgtttatgatg |
31684934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 292 - 485
Target Start/End: Original strand, 31704056 - 31704249
Alignment:
| Q |
292 |
taatgaaattgcagtggatattgcatgattggaacgacgagcaatgtttgaagattttaaagaattgtaaggatgcaatatcaaagaaaggtaaagaagg |
391 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |||||| ||||| |||| || ||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
31704056 |
taataaaattgcagtggatattgcatgattggaatgacgaggaatgtgtgaaaatattaaagaattgcaaggatgcaatatcaaagaaaggtaaacaagg |
31704155 |
T |
|
| Q |
392 |
aaaggtagttatcatagacatggtgttagattgtgagaaaggagacaataatgaatcagttgaaacacaactcttctttgatatgttgatgatg |
485 |
Q |
| |
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|| || || | |||||||||||||| || ||||||| | | || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31704156 |
gaaagtgattgtgatagacatggtgttggaaagtgagaaggaaagcattaatgaatcagttgaaacacaactcttctttgatatgttgatgatg |
31704249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 301 - 416
Target Start/End: Original strand, 31715402 - 31715517
Alignment:
| Q |
301 |
tgcagtggatattgcatgattggaacgacgagcaatgtttgaagattttaaagaattgtaaggatgcaatatcaaagaaaggtaaagaaggaaaggtagt |
400 |
Q |
| |
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||||||||||||||||||||||||| || ||| |||| | ||||| |||| ||||||||||||||||||| | ||||||||||||||||||||||| | |
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| T |
31715402 |
tgcagtggatattgcatgattggaatgatgaggaatgcgtaaagatattaaggaattgtaaggatgcaatagcgaagaaaggtaaagaaggaaaggtgat |
31715501 |
T |
|
| Q |
401 |
tatcatagacatggtg |
416 |
Q |
| |
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|||||||||||||||| |
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| T |
31715502 |
tatcatagacatggtg |
31715517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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