View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18887_low_7 (Length: 495)

Name: NF18887_low_7
Description: NF18887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18887_low_7
NF18887_low_7
[»] chr6 (68 HSPs)
chr6 (8-481)||(2186296-2186769)
chr6 (81-220)||(29827541-29827680)
chr6 (29-186)||(28096974-28097134)
chr6 (81-220)||(28141090-28141229)
chr6 (19-186)||(28150662-28150832)
chr6 (82-200)||(26637193-26637311)
chr6 (82-200)||(26743159-26743277)
chr6 (81-200)||(26885634-26885753)
chr6 (80-200)||(26960676-26960796)
chr6 (81-172)||(27529846-27529937)
chr6 (76-167)||(27697133-27697224)
chr6 (82-172)||(25075432-25075522)
chr6 (82-172)||(26850277-26850367)
chr6 (81-198)||(27680514-27680631)
chr6 (80-200)||(26951294-26951414)
chr6 (82-198)||(27591528-27591644)
chr6 (81-172)||(26144417-26144508)
chr6 (83-198)||(26624816-26624931)
chr6 (83-198)||(26730793-26730908)
chr6 (81-172)||(29842528-29842619)
chr6 (89-195)||(26804018-26804124)
chr6 (81-182)||(28186955-28187056)
chr6 (82-198)||(27676127-27676243)
chr6 (81-189)||(27704785-27704893)
chr6 (82-218)||(29469759-29469895)
chr6 (76-220)||(31286103-31286247)
chr6 (81-172)||(25484608-25484699)
chr6 (81-172)||(25512440-25512531)
chr6 (81-172)||(25546532-25546623)
chr6 (81-172)||(26057471-26057562)
chr6 (81-172)||(26077441-26077532)
chr6 (80-186)||(26863122-26863228)
chr6 (83-172)||(25581273-25581362)
chr6 (82-195)||(27603211-27603324)
chr6 (81-182)||(28296266-28296367)
chr6 (81-182)||(28515706-28515807)
chr6 (81-198)||(28787805-28787922)
chr6 (81-198)||(28793926-28794043)
chr6 (80-172)||(26978931-26979023)
chr6 (85-172)||(25491846-25491933)
chr6 (81-172)||(26657526-26657617)
chr6 (81-172)||(26763497-26763588)
chr6 (88-198)||(27609633-27609743)
chr6 (88-198)||(27717012-27717122)
chr6 (85-186)||(28327037-28327138)
chr6 (85-186)||(28504673-28504774)
chr6 (81-172)||(29673554-29673645)
chr6 (17-172)||(26938508-26938666)
chr6 (85-198)||(27663716-27663829)
chr6 (85-186)||(29694917-29695018)
chr6 (82-198)||(26813102-26813218)
chr6 (429-477)||(28141450-28141498)
chr6 (87-198)||(26648028-26648139)
chr6 (87-198)||(26753996-26754107)
chr6 (434-477)||(29827838-29827881)
chr6 (87-190)||(27216007-27216110)
chr6 (17-70)||(26657441-26657494)
chr6 (17-70)||(26763412-26763465)
chr6 (81-158)||(29759005-29759082)
chr6 (81-149)||(26825377-26825445)
chr6 (16-67)||(26813006-26813057)
chr6 (81-140)||(27426186-27426245)
chr6 (83-174)||(28490030-28490121)
chr6 (83-174)||(29802440-29802531)
chr6 (29-72)||(29842640-29842683)
chr6 (440-477)||(26341744-26341781)
chr6 (17-70)||(26885546-26885599)
chr6 (440-477)||(28151099-28151136)
[»] chr1 (6 HSPs)
chr1 (17-198)||(26137367-26137551)
chr1 (81-198)||(266862-266979)
chr1 (85-215)||(5921971-5922101)
chr1 (29-158)||(28126237-28126366)
chr1 (17-70)||(28132151-28132204)
chr1 (81-125)||(28132081-28132125)
[»] chr5 (1 HSPs)
chr5 (31-190)||(16692360-16692522)
[»] chr2 (2 HSPs)
chr2 (91-186)||(3281218-3281313)
chr2 (89-172)||(17991739-17991822)
[»] chr4 (7 HSPs)
chr4 (82-172)||(18678101-18678191)
chr4 (81-172)||(18730039-18730130)
chr4 (82-172)||(18654021-18654111)
chr4 (82-172)||(18722614-18722704)
chr4 (82-172)||(18688158-18688248)
chr4 (82-172)||(18697944-18698034)
chr4 (81-140)||(18075310-18075369)
[»] scaffold1870 (1 HSPs)
scaffold1870 (81-198)||(333-450)
[»] scaffold0419 (1 HSPs)
scaffold0419 (81-198)||(9051-9168)
[»] scaffold0019 (1 HSPs)
scaffold0019 (81-186)||(56816-56921)
[»] chr8 (7 HSPs)
chr8 (18-186)||(35984785-35984956)
chr8 (81-174)||(12590287-12590380)
chr8 (81-172)||(16371673-16371764)
chr8 (47-167)||(16441565-16441685)
chr8 (18-70)||(31906540-31906592)
chr8 (91-198)||(29272351-29272458)
chr8 (85-172)||(16450445-16450532)
[»] scaffold0349 (1 HSPs)
scaffold0349 (88-198)||(2052-2162)
[»] scaffold0277 (2 HSPs)
scaffold0277 (83-153)||(3261-3331)
scaffold0277 (83-153)||(12224-12294)
[»] scaffold0003 (1 HSPs)
scaffold0003 (81-140)||(61118-61177)
[»] chr3 (1 HSPs)
chr3 (81-140)||(615342-615401)


Alignment Details
Target: chr6 (Bit Score: 435; Significance: 0; HSPs: 68)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 8 - 481
Target Start/End: Original strand, 2186296 - 2186769
Alignment:
Q  8 attatacttattgcatcaaaaatcatattggagtgttggttgaaaaatcactcataaagattattgggggttgtgtgacattacatgacttgatagagga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2186296 attatacttattgcatcaaaaatcatattggagtgttggttgaaaaatcactcataaagattattgggggttgtgtgacattacatgacttgatagagga 2186395  T
Q  108 aatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagatatagttcctgttttacatgcaaat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2186396 aatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagatatagttcctgttttacatgcaaat 2186495  T
Q  208 tcggtgagtaagaataatgcatgtatatgtgtatataaacacctcaactttttatcttcaaccttgattttgtctttttgattatcagtgctactaatgc 307  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2186496 tcggtgagtaagaataatgcatgtatatgtgtatataaaca-ctcaactttttatcttcaaccttgattttgtctttttgattatcagtgctactaatgc 2186594  T
Q  308 taatgtaaatttccctatatgtacgtgttaagtttgtaatatttttgtttacttggttatgg-nnnnnnnnaatagggaacaagaaaaattgaaatatta 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  2186595 taatgtaaatttccctatatgtacgtgttaagtttgtaatatttttgtttacttggttatggtttttttttaatagggaacaagaaaaattgaaatatta 2186694  T
Q  407 tacctgaatttctcattgtctaaagaagaagaggtagaatggaaaggagatgaattgaagaagatggaaaatctt 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2186695 tacctgaatttctcattgtctaaagaagaagaggtagaatggaaaggagatgaattgaagaagatggaaaatctt 2186769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 29827541 - 29827680
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaa 180  Q
    |||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| | |||||    
T  29827541 tgtgacattacatgacttgatagaagacatgggtaaagaaattgtacgacaagaatcaccgaaagagcctggaaagcgtagtaggttgtggttctatgaa 29827640  T
Q  181 gatatagttcctgttttacatgcaaattcggtgagtaaga 220  Q
    ||||||||||  || ||| | | |||||||||||||||||    
T  29827641 gatatagttcaagtcttagaagaaaattcggtgagtaaga 29827680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 186
Target Start/End: Complemental strand, 28097134 - 28096974
Alignment:
Q  29 atcatattggagtgttggttgaaaaatcactcataaagattatt---gggggttgtgtgacattacatgacttgatagaggaaatgggtaaagaaatcgt 125  Q
    |||| ||||||||||||||| ||||||| ||  | |||||||||   | | | | |||||||||||||||||||||||| || |||||||||||||| ||    
T  28097134 atcacattggagtgttggttaaaaaatctcttgtgaagattattaatgagcgctttgtgacattacatgacttgatagaagacatgggtaaagaaattgt 28097035  T
Q  126 acgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagatata 186  Q
    | ||||||||||||||||||| |||||||||||||| ||||||| || |||||||||||||    
T  28097034 aagacaagaatcaccaaaagaacctggaaaacgtagcaggttgtcgttccatgaagatata 28096974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 28141090 - 28141229
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaa 180  Q
    ||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||| ||||| || |||| |||| ||    
T  28141090 tgtgacattacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgggaaacggagtagattatggttccataaa 28141189  T
Q  181 gatatagttcctgttttacatgcaaattcggtgagtaaga 220  Q
    || ||||| |  |||||| | | ||||| |||||||||||    
T  28141190 gacatagtccaagttttagaagaaaatttggtgagtaaga 28141229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 28150662 - 28150832
Alignment:
Q  19 tgcatcaaaaatcatattggagtgttggttgaaaaatcactcataaagattattg---ggggttgtgtgacattacatgacttgatagaggaaatgggta 115  Q
    ||||| ||| |||||||||||||||||||| ||||||| ||  |||| |||  |    |||||| ||| |||||||||||||||||||| || |||||||    
T  28150662 tgcatgaaatatcatattggagtgttggttaaaaaatctcttctaaaaatttgtcctcggggttatgtaacattacatgacttgatagaagacatgggta 28150761  T
Q  116 aagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagatata 186  Q
    ||||||| ||||||||||||||||||||||||||||| || || |  |||||||||| | |||||||||||    
T  28150762 aagaaattgtacgacaagaatcaccaaaagagcctgggaagcgcaacaggttgtggttctatgaagatata 28150832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 26637193 - 26637311
Alignment:
Q  82 gtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaag 181  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||  ||  |||||||| |||| |||||||||||||  ||||| |    
T  26637193 gtgacattacatgacttgatagaggatatgggtatagaaatcgtccgacaagaatcacgtaataagcctggagaacgcagtaggttgtggtgtcatgacg 26637292  T
Q  182 atatagttcctgttttaca 200  Q
    ||||||||| |||||||||    
T  26637293 atatagttcatgttttaca 26637311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 26743159 - 26743277
Alignment:
Q  82 gtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaag 181  Q
    |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||  ||  |||||||| |||| |||||||||||||  ||||| |    
T  26743159 gtgacattacatgacttgatagaggatatgggtatagaaatcgtccgacaagaatcacgtaataagcctggagaacgcagtaggttgtggtgtcatgacg 26743258  T
Q  182 atatagttcctgttttaca 200  Q
    ||||||||| |||||||||    
T  26743259 atatagttcatgttttaca 26743277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 81 - 200
Target Start/End: Original strand, 26885634 - 26885753
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaa 180  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||| || |||||||||   |||||||||||| ||||||||||||| ||||  || ||     
T  26885634 tgtgacattacatgacttggtagaggacatgggtaaagaaatcgttcggcaagaatcaagtaaagagcctggagaacgtagtaggttatggtgtcacgat 26885733  T
Q  181 gatatagttcctgttttaca 200  Q
    |||||||||| |||||||||    
T  26885734 gatatagttcatgttttaca 26885753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 26960676 - 26960796
Alignment:
Q  80 gtgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatga 179  Q
    |||||||||||||||||||||||||||| |||||||  ||||| || ||||| ||||||   ||||||||||||||||| |||||||||||||  | |||    
T  26960676 gtgtgacattacatgacttgatagaggatatgggtatggaaattgttcgacaggaatcaattaaagagcctggaaaacgcagtaggttgtggtgtcgtga 26960775  T
Q  180 agatatagttcctgttttaca 200  Q
     |||||||||| |||||||||    
T  26960776 tgatatagttcatgttttaca 26960796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 27529937 - 27529846
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    ||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||  | ||||||||| |||| |||||||||||||    
T  27529937 tgtgacattacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcacccgatgagcctggagaacgcagtaggttgtggt 27529846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 27697224 - 27697133
Alignment:
Q  76 ggttgtgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggtt 167  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| | |||||||||||| || | ||||||||    
T  27697224 ggttgtgtgacattacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcaactaaagagcctggagaaagaagtaggtt 27697133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 25075432 - 25075522
Alignment:
Q  82 gtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    |||||||||||||||||| ||||||| ||||||||||||||||| ||||| ||||||   |||||||||||| ||||||||||||||||||    
T  25075432 gtgacattacatgacttgttagaggacatgggtaaagaaatcgtccgacatgaatcaattaaagagcctggagaacgtagtaggttgtggt 25075522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 26850277 - 26850367
Alignment:
Q  82 gtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||   |||||||||||||  || |||||||||||||    
T  26850277 gtgacattacatgacttgatagaggacatgggtaaagaaatcgtccgacaagaatcaattaaagagcctggaaggcgcagtaggttgtggt 26850367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 27680514 - 27680631
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaa 180  Q
    ||||| |||||||||||||||| |||| |||||||||||| |||| |||||||||||||| |||||||||||| |||| |||||||| |||   || |||    
T  27680514 tgtgagattacatgacttgataaaggacatgggtaaagaagtcgtccgacaagaatcacctaaagagcctggagaacgaagtaggttatggcgtcaagaa 27680613  T
Q  181 gatatagttcctgtttta 198  Q
    |||||| ||| |||||||    
T  27680614 gatataattcatgtttta 27680631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 26951294 - 26951414
Alignment:
Q  80 gtgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatga 179  Q
    |||||||||||||||||||||||||||| ||||||| ||||||| | ||||||||||||   | ||| |||||| |||| |||||||||||||| | |||    
T  26951294 gtgtgacattacatgacttgatagaggatatgggtatagaaatcatccgacaagaatcaattagagaacctggagaacgcagtaggttgtggtctcgtga 26951393  T
Q  180 agatatagttcctgttttaca 200  Q
     ||||| |||| |||||||||    
T  26951394 tgatattgttcatgttttaca 26951414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 27591644 - 27591528
Alignment:
Q  82 gtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaag 181  Q
    |||||||||||||| ||||||||||  |||||||||||| |||| |||||||||||||| |||||||||||| || | || ||||| ||||| || || |    
T  27591644 gtgacattacatgaattgatagaggtcatgggtaaagaagtcgtccgacaagaatcacctaaagagcctggagaaagaagcaggttatggtctcaagatg 27591545  T
Q  182 atatagttcctgtttta 198  Q
    ||||||||| |||||||    
T  27591544 atatagttcatgtttta 27591528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 26144417 - 26144508
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||  |||||||| |||| |||||||||||||    
T  26144417 tgtgaccttacatgacttgatagaggacatgggtaaagaaatcgtccgacaagaatctcccaacaagcctggagaacgcagtaggttgtggt 26144508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 26624816 - 26624931
Alignment:
Q  83 tgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaaga 182  Q
    |||| |||||||||||||||||||| |||||||||| |||||| |||||||||||||| |||||||||||| |||| ||||| || ||||  || || ||    
T  26624816 tgaccttacatgacttgatagaggacatgggtaaagcaatcgtccgacaagaatcacctaaagagcctggagaacgaagtagattatggtgtcaagatga 26624915  T
Q  183 tatagttcctgtttta 198  Q
    |||| ||| |||||||    
T  26624916 tatatttcatgtttta 26624931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 26730793 - 26730908
Alignment:
Q  83 tgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaaga 182  Q
    |||| |||||||||||||||||||| |||||||||| |||||| |||||||||||||| |||||||||||| |||| ||||| || ||||  || || ||    
T  26730793 tgaccttacatgacttgatagaggacatgggtaaagcaatcgtccgacaagaatcacctaaagagcctggagaacgaagtagattatggtgtcaagatga 26730892  T
Q  183 tatagttcctgtttta 198  Q
    |||| ||| |||||||    
T  26730893 tatatttcatgtttta 26730908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 29842619 - 29842528
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    ||||||| |||||||||||||||| || |||||||||||||| ||||||| ||||||| | |||||||||||||| | ||||||||||||||    
T  29842619 tgtgacactacatgacttgatagaagacatgggtaaagaaattgtacgaccagaatcaacgaaagagcctggaaagcatagtaggttgtggt 29842528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 195
Target Start/End: Original strand, 26804018 - 26804124
Alignment:
Q  89 tacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagatatagt 188  Q
    |||||||||||||| |||| |||||||||||| |||| |||||||||||||| ||||| |||| |||||| |||||||| |||   ||||||||||||||    
T  26804018 tacatgacttgataaaggacatgggtaaagaagtcgtccgacaagaatcacctaaagatcctgaaaaacgaagtaggttatggcgtcatgaagatatagt 26804117  T
Q  189 tcctgtt 195  Q
    || ||||    
T  26804118 tcatgtt 26804124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 28186955 - 28187056
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaa 180  Q
    |||||| ||||||| |||||||||| |||||||||||||||| || ||  |||| || |||||||||||||||| ||||||||||||||||| |||| ||    
T  28186955 tgtgacgttacatgccttgatagagaaaatgggtaaagaaattgtccggaaagagtctccaaaagagcctggaagacgtagtaggttgtggttccataaa 28187054  T
Q  181 ga 182  Q
    ||    
T  28187055 ga 28187056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 198
Target Start/End: Complemental strand, 27676243 - 27676127
Alignment:
Q  82 gtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaag 181  Q
    |||||||||||||| ||||||||||  |||||||||||| | || |||||||||||||| |||||||||||| || | || ||||| ||||| || || |    
T  27676243 gtgacattacatgaattgatagaggtcatgggtaaagaagtggtccgacaagaatcacctaaagagcctggagaaagaagcaggttatggtctcaagatg 27676144  T
Q  182 atatagttcctgtttta 198  Q
    ||||||||| |||||||    
T  27676143 atatagttcatgtttta 27676127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 27704893 - 27704785
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaa 180  Q
    ||||||||||||| ||||||||||||| |||||||||||| |||| ||||||||||||   |||||||||||| || | |||||||| || | ||||||     
T  27704893 tgtgacattacataacttgatagaggatatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccatgat 27704794  T
Q  181 gatatagtt 189  Q
    |||||||||    
T  27704793 gatatagtt 27704785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 29469759 - 29469895
Alignment:
Q  82 gtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaag 181  Q
    |||||||||||||| ||||||||||| ||||| |||||||| ||  |||||||||||||  |||| ||||||||||| |||||||| ||||||  | |||    
T  29469759 gtgacattacatgatttgatagaggatatggggaaagaaattgttagacaagaatcacctgaagatcctggaaaacgcagtaggttatggtcctctaaag 29469858  T
Q  182 atatagttcctgttttacatgcaaattcggtgagtaa 218  Q
    ||||| |||  |||||| | | |||| ||||||||||    
T  29469859 atataattcaagttttagaagaaaatacggtgagtaa 29469895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 76 - 220
Target Start/End: Original strand, 31286103 - 31286247
Alignment:
Q  76 ggttgtgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtccc 175  Q
    |||||||||  ||||||||||||||||||||| |||||||||||| |||| |||||||||||||| |||||||| ||| || | |||||| | ||||  |    
T  31286103 ggttgtgtgggattacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcacctaaagagccaggagaaagaagtaggctatggtgtc 31286202  T
Q  176 atgaagatatagttcctgttttacatgcaaattcggtgagtaaga 220  Q
    | || |||||||||| || |||| ||| |||  | ||||||||||    
T  31286203 aagatgatatagttcatgctttaaatgaaaacactgtgagtaaga 31286247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 25484608 - 25484699
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    |||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||| || ||  |||||||| |||| |||||||||||||    
T  25484608 tgtgaccttacatgacttgatagaggacatgggtaaagaagtcgttcgacaagaatctcccaagaagcctggagaacgcagtaggttgtggt 25484699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 25512440 - 25512531
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    |||||| |||||||||||||||||||| ||||||||||||| ||| ||||||||||| || ||  |||||||| |||| |||||||||||||    
T  25512440 tgtgaccttacatgacttgatagaggacatgggtaaagaaaccgtccgacaagaatctcccaacaagcctggagaacgcagtaggttgtggt 25512531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 25546532 - 25546623
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    |||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||| || ||  |||||||| |||| |||||||||||||    
T  25546532 tgtgaccttacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatctcccaacaagcctggagaacgcagtaggttgtggt 25546623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 26057471 - 26057562
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    |||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||| || ||  |||||||| |||| |||||||||||||    
T  26057471 tgtgaccttacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatctcccaataagcctggagaacgcagtaggttgtggt 26057562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 26077441 - 26077532
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    |||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||| || ||  |||||||| |||| |||||||||||||    
T  26077441 tgtgaccttacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatctcccaagaagcctggagaacgcagtaggttgtggt 26077532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 26863122 - 26863228
Alignment:
Q  80 gtgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatga 179  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||||| ||||||||||| || |||||||| ||  |||| |||||||| ||||  |||||    
T  26863122 gtgtgagattacatgacttgatagaggacatgggcaaagaaatcgtccgacaagaatctcctaaagagccgggtgaacgaagtaggttatggtgtcatga 26863221  T
Q  180 agatata 186  Q
     ||||||    
T  26863222 tgatata 26863228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 25581273 - 25581362
Alignment:
Q  83 tgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    |||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||  | |||||| |||| |||||||||||||    
T  25581273 tgaccttacatgacttgatagaggacatgggtaaagaaatcgtccgacaagaatctcccaagaaccctggagaacgcagtaggttgtggt 25581362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 195
Target Start/End: Complemental strand, 27603324 - 27603211
Alignment:
Q  82 gtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaag 181  Q
    |||||| | ||| ||||||||||||| |||||||||||| |||| |||||||||||||| |||||||||||| || | |||||||| ||||  || || |    
T  27603324 gtgacactgcataacttgatagaggacatgggtaaagaagtcgtccgacaagaatcacctaaagagcctggagaaagaagtaggttatggtgtcaagacg 27603225  T
Q  182 atatagttcctgtt 195  Q
    ||||||||| ||||    
T  27603224 atatagttcatgtt 27603211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 28296367 - 28296266
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaa 180  Q
    |||||||||||||| |||||||||| |||||||||||||||| || |   || |||| ||||||||||| |||| ||||||||||||||||| |||| ||    
T  28296367 tgtgacattacatgccttgatagagaaaatgggtaaagaaattgtgcatgaaaaatctccaaaagagccaggaagacgtagtaggttgtggttccataaa 28296268  T
Q  181 ga 182  Q
    ||    
T  28296267 ga 28296266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 182
Target Start/End: Original strand, 28515706 - 28515807
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaa 180  Q
    |||||||||||||| |||||||||| |||||||||||||||| || |   || |||| ||||||||||| |||| ||||||||||||||||| |||| ||    
T  28515706 tgtgacattacatgccttgatagagaaaatgggtaaagaaattgtgcatgaaaaatctccaaaagagccaggaagacgtagtaggttgtggttccataaa 28515805  T
Q  181 ga 182  Q
    ||    
T  28515806 ga 28515807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 28787805 - 28787922
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaa 180  Q
    ||||| |||||||||||||||||| || |||||||||||| |||| ||||||||||| || |||||||||||| || | |||||||| ||||  || ||     
T  28787805 tgtgagattacatgacttgatagaagacatgggtaaagaagtcgtccgacaagaatcgcctaaagagcctggagaaagaagtaggttatggtgtcaagat 28787904  T
Q  181 gatatagttcctgtttta 198  Q
    |||||||||  |||||||    
T  28787905 gatatagttaatgtttta 28787922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 28793926 - 28794043
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaa 180  Q
    ||||| |||||||||||||||||| || |||||||||||| |||| ||||||||||| || |||||||||||| || | |||||||| ||||  || ||     
T  28793926 tgtgagattacatgacttgatagaagacatgggtaaagaagtcgtccgacaagaatcgcctaaagagcctggagaaagaagtaggttatggtgtcaagat 28794025  T
Q  181 gatatagttcctgtttta 198  Q
    |||||||||  |||||||    
T  28794026 gatatagttaatgtttta 28794043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 26978931 - 26979023
Alignment:
Q  80 gtgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    |||| ||||||||| ||||||||||||| ||||||| ||||||||| ||||||||||||   ||||| |||||| |||| |||||||||||||    
T  26978931 gtgttacattacattacttgatagaggatatgggtatagaaatcgtccgacaagaatcaattaaagaacctggagaacgcagtaggttgtggt 26979023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 25491933 - 25491846
Alignment:
Q  85 acattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    ||||||||| ||||||||||| | |||||||||||| |||| |||||||||||||  || || |||||| ||||||||||||||||||    
T  25491933 acattacataacttgatagagcacatgggtaaagaagtcgttcgacaagaatcacgtaatgatcctggagaacgtagtaggttgtggt 25491846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 26657526 - 26657617
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    |||| ||||||| || ||||||||||| ||||||||||||||||| ||||||||||||   |||||||| ||| ||||||||||||| ||||    
T  26657526 tgtggcattacacgatttgatagaggacatgggtaaagaaatcgtccgacaagaatcaagtaaagagcccggagaacgtagtaggttatggt 26657617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 81 - 172
Target Start/End: Original strand, 26763497 - 26763588
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    |||| ||||||| || ||||||||||| ||||||||||||||||| ||||||||||||   |||||||| ||| ||||||||||||| ||||    
T  26763497 tgtggcattacacgatttgatagaggacatgggtaaagaaatcgtccgacaagaatcaagtaaagagcccggagaacgtagtaggttatggt 26763588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 27609743 - 27609633
Alignment:
Q  88 ttacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagatatag 187  Q
    |||||||||||||||||||| |||||||||||| |||| ||||||||||||   |||||||||||| || | |||||||| || |  || || |||||||    
T  27609743 ttacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatag 27609644  T
Q  188 ttcctgtttta 198  Q
    ||| |||||||    
T  27609643 ttcgtgtttta 27609633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 27717122 - 27717012
Alignment:
Q  88 ttacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagatatag 187  Q
    |||||||||||||||||||| |||||||||||| |||| ||||||||||||   |||||||||||| || | |||||||| || |  || || |||||||    
T  27717122 ttacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatag 27717023  T
Q  188 ttcctgtttta 198  Q
    ||| |||||||    
T  27717022 ttcgtgtttta 27717012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 28327037 - 28327138
Alignment:
Q  85 acattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagata 184  Q
    |||||||||| ||| || ||| |||| ||||||||||| || ||||||||||| | |||||| ||||||||| |||||||||||||||  ||| ||||||    
T  28327037 acattacatgccttaatggagcaaataggtaaagaaattgttcgacaagaatccctaaaagaacctggaaaatgtagtaggttgtggtttcataaagata 28327136  T
Q  185 ta 186  Q
    ||    
T  28327137 ta 28327138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 85 - 186
Target Start/End: Original strand, 28504673 - 28504774
Alignment:
Q  85 acattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagata 184  Q
    |||||||||| ||| || ||| |||| ||||||||||| || ||||||||||| | |||||| ||||||||| |||||||||||||||  ||| ||||||    
T  28504673 acattacatgccttaatggagcaaataggtaaagaaattgttcgacaagaatccctaaaagaacctggaaaatgtagtaggttgtggtttcataaagata 28504772  T
Q  185 ta 186  Q
    ||    
T  28504773 ta 28504774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 29673645 - 29673554
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    ||||||||||||||| ||| ||||||| ||||| |||||||| ||  |||||||| ||||  |||| |||||||||||||||||||| ||||    
T  29673645 tgtgacattacatgatttggtagaggatatgggaaaagaaattgttagacaagaagcacctgaagatcctggaaaacgtagtaggttatggt 29673554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 26938508 - 26938666
Alignment:
Q  17 attgcatcaaaaatcatattggagtgttggttgaaaaatcactcataaagattattggg-----ggttgtgtgacattacatgacttgatagaggaaatg 111  Q
    ||||||| ||||||||| |||||||||||||| | ||||| ||||||||||||||| ||      ||  ||| | ||||||||||||||| ||||| |||    
T  26938508 attgcataaaaaatcatgttggagtgttggttaataaatctctcataaagattattcggtcaacagt--tgttagattacatgacttgattgaggacatg 26938605  T
Q  112 ggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    ||||||||||| ||  |||||||||||   |||||| ||||| |||| | ||| |||||||    
T  26938606 ggtaaagaaattgttagacaagaatcagtcaaagaggctggagaacgcactagattgtggt 26938666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 198
Target Start/End: Complemental strand, 27663829 - 27663716
Alignment:
Q  85 acattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagata 184  Q
    ||||||||||||||||||||| | ||||||| |||||| || ||||||||||||   |||||||||||| | || | ||||||||||   ||||| ||||    
T  27663829 acattacatgacttgatagagtatatgggtatagaaatagtccgacaagaatcaattaaagagcctggagagcgcactaggttgtggcgtcatgatgata 27663730  T
Q  185 tagttcctgtttta 198  Q
    ||| || |||||||    
T  27663729 tagctcatgtttta 27663716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 186
Target Start/End: Complemental strand, 29695018 - 29694917
Alignment:
Q  85 acattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagata 184  Q
    ||||||||||| ||||||||||| ||||| |||||||| ||  ||| |||||||||  |||| ||||||||||| | |||||| ||| || |||||||||    
T  29695018 acattacatgatttgatagaggatatggggaaagaaattgttagacgagaatcacctgaagatcctggaaaacgcactaggttatgggcctatgaagata 29694919  T
Q  185 ta 186  Q
    ||    
T  29694918 ta 29694917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 26813102 - 26813218
Alignment:
Q  82 gtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaag 181  Q
    |||||||||||||||||||||||| | | |||||||||||| || | ||||||||||||  |||| || ||| |||| |||||| | ||||  || || |    
T  26813102 gtgacattacatgacttgatagagcacacgggtaaagaaattgtccaacaagaatcacctgaagaaccaggagaacgaagtaggctatggtgtcaagatg 26813201  T
Q  182 atatagttcctgtttta 198  Q
    ||||||||| |||||||    
T  26813202 atatagttcatgtttta 26813218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 429 - 477
Target Start/End: Original strand, 28141450 - 28141498
Alignment:
Q  429 aagaagaagaggtagaatggaaaggagatgaattgaagaagatggaaaa 477  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  28141450 aagaagaagtggtagaatggaaaggagatgaattaaagaagatggaaaa 28141498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 26648028 - 26648139
Alignment:
Q  87 attacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagatata 186  Q
    |||||||||||||||| |||| |||||||| ||| | || |||||||||||||  |||||||||||| |||  |||||||| ||||  || || || |||    
T  26648028 attacatgacttgataaaggacatgggtaaggaagtagtccgacaagaatcacgtaaagagcctggagaacaaagtaggttatggtgtcaagatgaaata 26648127  T
Q  187 gttcctgtttta 198  Q
    |||| |||||||    
T  26648128 gttcatgtttta 26648139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 26753996 - 26754107
Alignment:
Q  87 attacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagatata 186  Q
    |||||||||||||||| |||| |||||||| ||| | || |||||||||||||  |||||||||||| |||  |||||||| ||||  || || || |||    
T  26753996 attacatgacttgataaaggacatgggtaaggaagtagtccgacaagaatcacgtaaagagcctggagaacaaagtaggttatggtgtcaagatgaaata 26754095  T
Q  187 gttcctgtttta 198  Q
    |||| |||||||    
T  26754096 gttcatgtttta 26754107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 434 - 477
Target Start/End: Original strand, 29827838 - 29827881
Alignment:
Q  434 gaagaggtagaatggaaaggagatgaattgaagaagatggaaaa 477  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  29827838 gaagaggtagaatggaaaggagatgaattgaagaagatgaaaaa 29827881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 27216007 - 27216110
Alignment:
Q  87 attacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagatata 186  Q
    ||||||||||||||||||||| ||||||| |||| | || ||||||||||||||  |  | |||||  |||| |||||||||||||  || || ||||||    
T  27216007 attacatgacttgatagaggatatgggtagagaagttgtccgacaagaatcacccgacaatcctggggaacgcagtaggttgtggtttcacgatgatata 27216106  T
Q  187 gttc 190  Q
    ||||    
T  27216107 gttc 27216110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 26657441 - 26657494
Alignment:
Q  17 attgcatcaaaaatcatattggagtgttggttgaaaaatcactcataaagatta 70  Q
    ||||||| ||| ||||| |||||||||||||||||||||| |||||| ||||||    
T  26657441 attgcataaaacatcatgttggagtgttggttgaaaaatctctcatagagatta 26657494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 26763412 - 26763465
Alignment:
Q  17 attgcatcaaaaatcatattggagtgttggttgaaaaatcactcataaagatta 70  Q
    ||||||| ||| ||||| |||||||||||||||||||||| |||||| ||||||    
T  26763412 attgcataaaacatcatgttggagtgttggttgaaaaatctctcatagagatta 26763465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 29759082 - 29759005
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacg 158  Q
    ||||||||| ||||| ||| ||||||| |||||||||||||| ||  |||||||||| ||  |||| |||||||||||    
T  29759082 tgtgacattgcatgatttggtagaggatatgggtaaagaaattgttagacaagaatcgcctcaagatcctggaaaacg 29759005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 26825377 - 26825445
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcc 149  Q
    |||||||||||||||||||||| |||| ||||| |||||| | || |||||| ||||| | ||||||||    
T  26825377 tgtgacattacatgacttgataaaggacatgggcaaagaagtagtccgacaacaatcatctaaagagcc 26825445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 26813006 - 26813057
Alignment:
Q  16 tattgcatcaaaaatcatattggagtgttggttgaaaaatcactcataaaga 67  Q
    |||||||| ||||  || ||||||||||||||||||||||| ||||||||||    
T  26813006 tattgcataaaaagccacattggagtgttggttgaaaaatctctcataaaga 26813057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 27426245 - 27426186
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcacc 140  Q
    |||| |||||||| ||||||||||| | |||||||||||| |||| |||| |||||||||    
T  27426245 tgtgtcattacataacttgatagagaacatgggtaaagaactcgtccgactagaatcacc 27426186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 28490121 - 28490030
Alignment:
Q  83 tgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcc 174  Q
    |||||||||| || ||| ||||||| ||||| |||||||| ||  ||||||| |||||| || | ||||||||||| |||||| | ||||||    
T  28490121 tgacattacacgatttggtagaggatatggggaaagaaattgttagacaagagtcaccagaaaatcctggaaaacgcagtaggctatggtcc 28490030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 174
Target Start/End: Complemental strand, 29802531 - 29802440
Alignment:
Q  83 tgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcc 174  Q
    |||||||||| || ||| ||||||| ||||| |||||||| ||  ||||||| |||||| || | ||||||||||| |||||| | ||||||    
T  29802531 tgacattacacgatttggtagaggatatggggaaagaaattgttagacaagagtcaccagaaaatcctggaaaacgcagtaggctatggtcc 29802440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #65
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 29842683 - 29842640
Alignment:
Q  29 atcatattggagtgttggttgaaaaatcactcataaagattatt 72  Q
    ||||||||||||||||||| |||||| | |||||||||||||||    
T  29842683 atcatattggagtgttggtcgaaaaaactctcataaagattatt 29842640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #66
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 477
Target Start/End: Complemental strand, 26341781 - 26341744
Alignment:
Q  440 gtagaatggaaaggagatgaattgaagaagatggaaaa 477  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  26341781 gtagaatggaaaggagatgaattcaagaagatgaaaaa 26341744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #67
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 26885546 - 26885599
Alignment:
Q  17 attgcatcaaaaatcatattggagtgttggttgaaaaatcactcataaagatta 70  Q
    ||||||| ||| ||||| ||||||||||||| |||||||| ||| |||||||||    
T  26885546 attgcataaaacatcatgttggagtgttggtcgaaaaatctctcttaaagatta 26885599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #68
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 477
Target Start/End: Original strand, 28151099 - 28151136
Alignment:
Q  440 gtagaatggaaaggagatgaattgaagaagatggaaaa 477  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  28151099 gtagaatggaaaggagatgaattcaagaagatgaaaaa 28151136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 26137367 - 26137551
Alignment:
Q  17 attgcatcaaaaatcatattggagtgttggttgaaaaatcactcataaagatta---ttgggggttgtgtgacattacatgacttgatagaggaaatggg 113  Q
    ||||||| |||| |||| |||||||||||||||| ||| | ||||| |||||||   ||   |||| |||| |||||||||||||||||||||| |||||    
T  26137367 attgcataaaaagtcatgttggagtgttggttgataaagctctcatgaagattaatttttatggttttgtggcattacatgacttgatagaggatatggg 26137466  T
Q  114 taaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagatatagttcctgtttta 198  Q
    ||||||||| || |||||||||||||| ||||| ||||||||||| |||||||||||||  |||||||||||||||| |||||||    
T  26137467 taaagaaattgtccgacaagaatcacccaaagaacctggaaaacgcagtaggttgtggtttcatgaagatatagttcatgtttta 26137551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 81 - 198
Target Start/End: Complemental strand, 266979 - 266862
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaa 180  Q
    |||||||||||||||| |||||||||| |||||||||||| | || || ||||||||||| |||||||||||| |||| |||||||| ||||  || ||     
T  266979 tgtgacattacatgacatgatagaggacatgggtaaagaagtggtccgccaagaatcacctaaagagcctggagaacgaagtaggttatggtgtcaagat 266880  T
Q  181 gatatagttcctgtttta 198  Q
    |||||||||| |||||||    
T  266879 gatatagttcatgtttta 266862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 85 - 215
Target Start/End: Complemental strand, 5922101 - 5921971
Alignment:
Q  85 acattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagata 184  Q
    |||||||||||  |||||||||| ||||| |||||||| ||  ||||||||||||| |||||||||||||| || |||||||| |||| || ||||||||    
T  5922101 acattacatgatgtgatagaggacatgggaaaagaaattgttagacaagaatcaccgaaagagcctggaaagcgcagtaggttatggtgccctgaagata 5922002  T
Q  185 tagttcctgttttacatgcaaattcggtgag 215  Q
    ||||||  |||||| | | |||| |||||||    
T  5922001 tagttcaagttttagaagaaaatacggtgag 5921971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 158
Target Start/End: Complemental strand, 28126366 - 28126237
Alignment:
Q  29 atcatattggagtgttggttgaaaaatcactcataaagattattgggggttgtgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacg 128  Q
    ||||| |||||||||||||||||||||| |||||  |||||| |      | ||||||||||||||||||||||||||| | ||||||||||||||| ||    
T  28126366 atcatgttggagtgttggttgaaaaatctctcattgagattaatactcaatatgtgacattacatgacttgatagaggatacgggtaaagaaatcgtccg 28126267  T
Q  129 acaagaatcaccaaaagagcctggaaaacg 158  Q
      |||||||||  |||||||||||| ||||    
T  28126266 gaaagaatcacgtaaagagcctggagaacg 28126237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 28132204 - 28132151
Alignment:
Q  17 attgcatcaaaaatcatattggagtgttggttgaaaaatcactcataaagatta 70  Q
    ||||||| ||| ||||| ||||||||||||| |||||||| |||||| ||||||    
T  28132204 attgcataaaacatcatgttggagtgttggtcgaaaaatctctcatagagatta 28132151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 28132125 - 28132081
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgt 125  Q
    |||||||||||||||||||||||| || |  ||||||||||||||    
T  28132125 tgtgacattacatgacttgatagaagacacaggtaaagaaatcgt 28132081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 190
Target Start/End: Original strand, 16692360 - 16692522
Alignment:
Q  31 catattggagtgttggttgaaaaatcactcataaagattattg---ggggttgtgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtac 127  Q
    ||||||||||| |||||||||||||| || |||||||||| |    |||||| ||||||||| ||| ||||||| ||||| |||||||||||||| || |    
T  16692360 catattggagtattggttgaaaaatcccttataaagattaatcaatggggttatgtgacattgcatcacttgattgaggacatgggtaaagaaattgtcc 16692459  T
Q  128 gacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagatatagttc 190  Q
    || ||||||| |||||| | ||||| ||||| |||||||||||||  || |||||||||||||    
T  16692460 gaaaagaatccccaaaacatcctggtaaacgcagtaggttgtggtttcacgaagatatagttc 16692522  T

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Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 3281218 - 3281313
Alignment:
Q  91 catgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagatata 186  Q
    |||||||||||||| || |||||||||||||| ||| |||| ||||||  || |||||||||||||||||| |||||||||| |||||||||||||    
T  3281218 catgacttgatagaagacatgggtaaagaaattgtaagacaggaatcagtaagagagcctggaaaacgtagcaggttgtggttccatgaagatata 3281313  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 17991822 - 17991739
Alignment:
Q  89 tacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    ||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||| |||| ||||| |||||||    
T  17991822 tacatgacttgatagaggacatgggtaaagaaatcgttcggcaagaatcacctaaagagcctggagaacggagtagattgtggt 17991739  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 18678191 - 18678101
Alignment:
Q  82 gtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    |||||||||||||||||| ||||||  ||||||||||||||||| ||  |||||||||| |||||||||| ||| ||||||||||||||||    
T  18678191 gtgacattacatgacttgctagaggtcatgggtaaagaaatcgtccggaaagaatcacccaaagagcctgaaaagcgtagtaggttgtggt 18678101  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 18730130 - 18730039
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    ||||||||||||||||||| ||||||  ||||||||||||||||| ||  |||||||||| |||||||||| ||| |||||| |||||||||    
T  18730130 tgtgacattacatgacttgctagaggtcatgggtaaagaaatcgtccggaaagaatcacccaaagagcctgaaaagcgtagtcggttgtggt 18730039  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 18654111 - 18654021
Alignment:
Q  82 gtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    |||||||||||||||||| ||||||  ||||||||||||||||| ||  |||||||||| ||| |||||| ||| ||||||||||||||||    
T  18654111 gtgacattacatgacttgctagaggtcatgggtaaagaaatcgtccggaaagaatcacctaaacagcctgaaaagcgtagtaggttgtggt 18654021  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 18722704 - 18722614
Alignment:
Q  82 gtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    |||||||||||||||||| ||||||  ||||||||||||||| | ||  |||||||||| |||||||||| |||||||||| |||||||||    
T  18722704 gtgacattacatgacttgctagaggtcatgggtaaagaaatcattcgtaaagaatcacctaaagagcctgaaaaacgtagtcggttgtggt 18722614  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 18688248 - 18688158
Alignment:
Q  82 gtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    |||||||||||||||||| ||||||  |||||||||||||| || ||  |||||||||| |||||||||| ||| |||||| |||||||||    
T  18688248 gtgacattacatgacttgctagaggtcatgggtaaagaaattgtccggaaagaatcacctaaagagcctgaaaagcgtagtcggttgtggt 18688158  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 18698034 - 18697944
Alignment:
Q  82 gtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    |||||||||||||||||| ||||||  ||||||||||||||||| ||  |||||||||| |||||||||| ||| |||||| | |||||||    
T  18698034 gtgacattacatgacttgctagaggccatgggtaaagaaatcgtccggaaagaatcacccaaagagcctgaaaagcgtagtcgattgtggt 18697944  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 18075310 - 18075369
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcacc 140  Q
    |||| |||||||| ||||||||||| | |||||||||||| |||| |||| |||||||||    
T  18075310 tgtgtcattacataacttgatagagaacatgggtaaagaactcgtccgactagaatcacc 18075369  T

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Target: scaffold1870 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 333 - 450
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaa 180  Q
    |||||||||||||||||| |||||||| |||||||||||| |||||||||||||||| || |||||||| ||| || | |||||||| ||||  || ||     
T  333 tgtgacattacatgactttatagaggacatgggtaaagaagtcgtacgacaagaatcgcctaaagagccaggagaaagaagtaggttatggtgtcaagat 432  T
Q  181 gatatagttcctgtttta 198  Q
    |||||||||  |||||||    
T  433 gatatagttaatgtttta 450  T

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Target: scaffold0419 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 81 - 198
Target Start/End: Original strand, 9051 - 9168
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaa 180  Q
    |||||||||||||||||| |||||||| |||||||||||| |||||||||||||||| || |||||||| ||| || | |||||||| ||||  || ||     
T  9051 tgtgacattacatgactttatagaggacatgggtaaagaagtcgtacgacaagaatcgcctaaagagccaggagaaagaagtaggttatggtgtcaagat 9150  T
Q  181 gatatagttcctgtttta 198  Q
    |||||||||  |||||||    
T  9151 gatatagttaatgtttta 9168  T

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Target: scaffold0019 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 56921 - 56816
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaa 180  Q
    |||||| ||||||| |||||||||| |||||||||||||||| || ||  |||| || |||||||||||||||| |||||||||||| |||| |||| ||    
T  56921 tgtgacgttacatgccttgatagagaaaatgggtaaagaaattgtccgcaaagagtctccaaaagagcctggaagacgtagtaggttatggttccataaa 56822  T
Q  181 gatata 186  Q
    ||||||    
T  56821 gatata 56816  T

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Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 35984785 - 35984956
Alignment:
Q  18 ttgcatcaaaaatcatattggagtgttggttgaaaaatcactcataaagattattgggggttgtg---tgacattacatgacttgatagaggaaatgggt 114  Q
    |||||| ||| ||||||||||||| |||||||||||||| ||||||||||||| |  |  | ||    ||||  |||||| |||||||||||| ||||||    
T  35984785 ttgcatgaaatatcatattggagtattggttgaaaaatctctcataaagattagttcgcatagtaaattgactctacatgccttgatagaggacatgggt 35984884  T
Q  115 aaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagatata 186  Q
    || ||||| || ||||  ||||||||| |||| |||||||| |||||| |||| ||||| ||||||||||||    
T  35984885 aaggaaattgttcgactggaatcaccagaagaacctggaaagcgtagtcggttatggtctcatgaagatata 35984956  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 81 - 174
Target Start/End: Original strand, 12590287 - 12590380
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcc 174  Q
    ||||||||||||||| ||| ||||||| ||||| |||||||| ||  |||||||||||||  || | |||||||||||||||||||| ||||||    
T  12590287 tgtgacattacatgatttggtagaggatatggggaaagaaatagttagacaagaatcaccggaaaatcctggaaaacgtagtaggttatggtcc 12590380  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 81 - 172
Target Start/End: Complemental strand, 16371764 - 16371673
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    ||||||||||||| || || |||| || |||||||||||||| || ||||||||||||||||| ||||| ||  ||||||||||||| ||||    
T  16371764 tgtgacattacataacctggtagaagacatgggtaaagaaattgtccgacaagaatcaccaaaggagccaggcgaacgtagtaggttatggt 16371673  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 47 - 167
Target Start/End: Original strand, 16441565 - 16441685
Alignment:
Q  47 ttgaaaaatcactcataaagattattgggggttgtgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaaga 146  Q
    |||||||||| ||| ||||||||  ||  |||  ||||||||||||| ||||||||   || ||||| | |||||| || ||||| ||||||||||| ||    
T  16441565 ttgaaaaatctctcttaaagattgatgatggtcttgtgacattacataacttgatacgagacatgggcagagaaattgttcgacaggaatcaccaaatga 16441664  T
Q  147 gcctggaaaacgtagtaggtt 167  Q
    |||||| ||||||||||||||    
T  16441665 gcctggcaaacgtagtaggtt 16441685  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 31906540 - 31906592
Alignment:
Q  18 ttgcatcaaaaatcatattggagtgttggttgaaaaatcactcataaagatta 70  Q
    |||||| ||| ||||||||||||| |||||||||||||| |||||||||||||    
T  31906540 ttgcatgaaatatcatattggagtattggttgaaaaatctctcataaagatta 31906592  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 29272458 - 29272351
Alignment:
Q  91 catgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagatatagttc 190  Q
    ||||| ||||||| ||| |||||||||||| |||| ||||||||||||   |||||||||||| || | |||||||| || | ||| || ||| ||||||    
T  29272458 catgatttgataggggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgccaggatgatctagttc 29272359  T
Q  191 ctgtttta 198  Q
     |||||||    
T  29272358 gtgtttta 29272351  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 172
Target Start/End: Original strand, 16450445 - 16450532
Alignment:
Q  85 acattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggt 172  Q
    |||||||||||| ||||| |  ||||||| | |||||| || ||||  ||||||||| | |||||||| |||||||||||||| ||||    
T  16450445 acattacatgacctgatacaaaaaatgggcagagaaattgtccgacttgaatcaccacatgagcctggcaaacgtagtaggttatggt 16450532  T

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Target: scaffold0349 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 2162 - 2052
Alignment:
Q  88 ttacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaaacgtagtaggttgtggtcccatgaagatatag 187  Q
    |||||||||||||||||||| |||||||||||| |||| ||||||||||||   |||||||||||| || | |||||||| || |  || || |||||||    
T  2162 ttacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctggagaaagaagtaggttatgctgtcaggatgatatag 2063  T
Q  188 ttcctgtttta 198  Q
    ||| |||||||    
T  2062 ttcgtgtttta 2052  T

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Target: scaffold0277 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 3331 - 3261
Alignment:
Q  83 tgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctgga 153  Q
    ||||| |||||||||||||| |||| |||||||||||| |||| ||||||||||| || ||||||||||||    
T  3331 tgacactacatgacttgataaaggacatgggtaaagaagtcgtccgacaagaatcgcccaaagagcctgga 3261  T

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Target: scaffold0277; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 153
Target Start/End: Complemental strand, 12294 - 12224
Alignment:
Q  83 tgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctgga 153  Q
    ||||| |||||||||||||| |||| |||||||||||| |||| ||||||||||| || ||||||||||||    
T  12294 tgacactacatgacttgataaaggacatgggtaaagaagtcgtccgacaagaatcgcccaaagagcctgga 12224  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 61118 - 61177
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcacc 140  Q
    |||| |||||||| ||||||||||| | |||||||||||| |||| |||| |||||||||    
T  61118 tgtgtcattacataacttgatagagaacatgggtaaagaactcgtccgactagaatcacc 61177  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 615342 - 615401
Alignment:
Q  81 tgtgacattacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcacc 140  Q
    ||||||||||||||| ||| ||||||| ||||| |||||||| ||  |||||||||||||    
T  615342 tgtgacattacatgatttggtagaggatatggggaaagaaattgttagacaagaatcacc 615401  T

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