View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18888_high_1 (Length: 804)
Name: NF18888_high_1
Description: NF18888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18888_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 553; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 15 - 575
Target Start/End: Original strand, 3332031 - 3332591
Alignment:
| Q |
15 |
aataacaacaggtccagaagcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaatatatggtcaaaccagaagcagcg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332031 |
aataacaacaggtccagaagcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaatatatggtcaaaccagaagcagcg |
3332130 |
T |
|
| Q |
115 |
ggcggagcaggtggtggaagaaacgatccagccagcgaaagaatctcgaaccttccatgaagtgtaacaacagccccaggagaagccggttgccttagtg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3332131 |
ggcggagcaggtggtggaagaaacgatccagccagcgaaagaatctcgaaccttccatgaagtgtaacaacagctccaggagaagccggttgccttagtg |
3332230 |
T |
|
| Q |
215 |
tcacgtttgtaaccgtccctgtcccactcatgatgcaaacgcctctttgacggcgtctagcaaagttgttgacactttcaacaacgtcacaaccgtctgc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3332231 |
tcacgtttgtaaccgtccctgtcccactcatgatgcaaacgcctctttgacggcgtctagcgaagttgttgacactttcaacaacgtcacaaccgtctgc |
3332330 |
T |
|
| Q |
315 |
aacttccatcacgtgagttttcaaggcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctcttggt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332331 |
aacttccatcacgtgagttttcaaggcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctcttggt |
3332430 |
T |
|
| Q |
415 |
cttcttgtcattgaatcggtgtcgccaccggaaccacctcctccggattctaacttggggctaaaatctgtgctgaacttgttgttgctgttttcttctc |
514 |
Q |
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| T |
3332431 |
cttcttgtcattgaatcggtgtcgccaccggaaccacctcctccggattctaacttggggctaaaatctgtgctgaacttgttgttgctgttttcttctc |
3332530 |
T |
|
| Q |
515 |
ggtttgtgaggttgagtccaccgccgctgctacttccgctttgttcatcttgatctgtggt |
575 |
Q |
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| T |
3332531 |
ggtttgtgaggttgagtccaccgccgctgctacttccgctttgttcatcttgatctgtggt |
3332591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 642 - 797
Target Start/End: Original strand, 3332658 - 3332813
Alignment:
| Q |
642 |
atggtgaagatgaagatctcttgctgtgtggaaaggtggaggaagtgaatgtccatgtgatgttatttgatccataattaatctctataatcgatatgtg |
741 |
Q |
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| T |
3332658 |
atggtgaagatgaagatctcttgctgtgtggaaaggtggaggaagtgaatgtccatgtgatgttatttgatccataattaatctctataatcgatatgtg |
3332757 |
T |
|
| Q |
742 |
ctgctgagatgagtattctttcttcaaatatacttaattcctttgcagtataatat |
797 |
Q |
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| T |
3332758 |
ctgctgagatgagtattctttcttcaaatatacttaattcctttgcaatagaatat |
3332813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 39960017 - 39959944
Alignment:
| Q |
19 |
acaacaggtccagaagcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaata |
92 |
Q |
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| T |
39960017 |
acaacaggtcctgaagcaatcaaagcaccaactacagcacctccaacaacttgtccttgagcacccgctaaata |
39959944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 340 - 420
Target Start/End: Original strand, 13212814 - 13212894
Alignment:
| Q |
340 |
gcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctcttggtcttctt |
420 |
Q |
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| T |
13212814 |
gcgttcgcgctgtccctcgtgatgatgataggtggttttggtttgtttttcgaacctgctggtcttcctcttggtcttctt |
13212894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 16579014 - 16578946
Alignment:
| Q |
21 |
aacaggtccagaagcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaa |
89 |
Q |
| |
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| T |
16579014 |
aacaggtccagcagcaatcaaaggtccaacaacacttccaccaacaacttgcccttgtccaccggctaa |
16578946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 370 - 418
Target Start/End: Original strand, 32803230 - 32803278
Alignment:
| Q |
370 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
418 |
Q |
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|
|||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
32803230 |
ggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttc |
32803278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 370 - 418
Target Start/End: Complemental strand, 16578665 - 16578617
Alignment:
| Q |
370 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
418 |
Q |
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|||||||||||||||||||| || || | |||||||||||||||||||| |
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| T |
16578665 |
ggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttc |
16578617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Original strand, 32809703 - 32809738
Alignment:
| Q |
383 |
tgtttttggatccagctggtcttcctcttggtcttc |
418 |
Q |
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||||||||||||||| |||||||||||||||||||| |
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| T |
32809703 |
tgtttttggatccaggtggtcttcctcttggtcttc |
32809738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 410
Target Start/End: Complemental strand, 46200964 - 46200911
Alignment:
| Q |
357 |
tgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctct |
410 |
Q |
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|||||||||||| |||||||||||||||||||| || |||| ||| | |||||| |
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| T |
46200964 |
tgtgatgataataggtggttttggtttgttttttgagccaggtggacgtcctct |
46200911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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