View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18888_high_4 (Length: 583)

Name: NF18888_high_4
Description: NF18888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18888_high_4
NF18888_high_4
[»] chr6 (13 HSPs)
chr6 (401-583)||(17715701-17715883)
chr6 (255-379)||(11946574-11946698)
chr6 (255-380)||(14666535-14666662)
chr6 (256-379)||(17715509-17715624)
chr6 (256-378)||(14323138-14323252)
chr6 (256-378)||(14416148-14416262)
chr6 (462-523)||(14415928-14415989)
chr6 (455-524)||(14666770-14666839)
chr6 (463-511)||(11946825-11946873)
chr6 (535-583)||(11946942-11946990)
chr6 (536-583)||(14666876-14666923)
chr6 (462-495)||(14322946-14322979)
chr6 (537-570)||(14415840-14415873)
[»] chr3 (7 HSPs)
chr3 (256-378)||(13852355-13852477)
chr3 (266-379)||(4848255-4848368)
chr3 (255-365)||(1658851-1658961)
chr3 (455-524)||(1658667-1658736)
chr3 (455-513)||(13852152-13852210)
chr3 (535-583)||(1658583-1658631)
chr3 (535-583)||(13852041-13852089)
[»] chr2 (2 HSPs)
chr2 (144-255)||(18788903-18789014)
chr2 (33-68)||(18789052-18789087)
[»] chr8 (7 HSPs)
chr8 (256-378)||(28244496-28244618)
chr8 (455-512)||(28244777-28244834)
chr8 (535-583)||(45349468-45349516)
chr8 (295-369)||(17629685-17629760)
chr8 (535-583)||(28244898-28244946)
chr8 (535-583)||(17629897-17629944)
chr8 (474-511)||(45349374-45349411)
[»] chr7 (3 HSPs)
chr7 (256-378)||(9237855-9237977)
chr7 (462-523)||(9238130-9238191)
chr7 (535-583)||(9238244-9238292)
[»] scaffold0838 (2 HSPs)
scaffold0838 (256-378)||(181-303)
scaffold0838 (462-495)||(1-34)
[»] scaffold0832 (2 HSPs)
scaffold0832 (256-378)||(212-334)
scaffold0832 (462-523)||(4-65)
[»] chr5 (5 HSPs)
chr5 (455-524)||(24047022-24047091)
chr5 (254-305)||(31406124-31406175)
chr5 (455-524)||(31406330-31406401)
chr5 (329-380)||(24047200-24047251)
chr5 (343-380)||(31406181-31406218)


Alignment Details
Target: chr6 (Bit Score: 151; Significance: 1e-79; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 401 - 583
Target Start/End: Original strand, 17715701 - 17715883
Alignment:
Q  401 taacaatagaacacaaattcacgtgttaaaaaatttagtcaataatagtcaacaataagccattgagaaacacttttctctctcttccgtcaaaaatcac 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |    
T  17715701 taacaatagaacacaaattcacgtgttaaaaaatttagtcaataatggtcaacagtaagccattgagaaacacttttctctctcttccgtcaaaaatctc 17715800  T
Q  501 ctttctctctcaccgacatctcaagcttcatcgacgaccaccgtcacgctcacaccatcgaccaccgtcaagcttcaccgacg 583  Q
     ||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  17715801 ttttctctctcaccgagatctcaagcttcaccgacgaccaccgtcatgctcacaccatcgaccaccgtcaagtttcaccgacg 17715883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 255 - 379
Target Start/End: Original strand, 11946574 - 11946698
Alignment:
Q  255 acactactataataatgacatttagtaacaaggtgattgcaacacttgaaaaattgttagttgatatagtgatatagtaacaactgagtaaaagtgttag 354  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||     
T  11946574 acactactacaataatgacttttagtaacaaggtgattgcaacacttgaaaaattgttagctgatatagtgatatagtaacaattgagtaaaagtgttac 11946673  T
Q  355 atccaatacaacaagtaccatccct 379  Q
    |||||||||||||||||||||||||    
T  11946674 atccaatacaacaagtaccatccct 11946698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 255 - 380
Target Start/End: Original strand, 14666535 - 14666662
Alignment:
Q  255 acactactataataatgacatttagtaacaaggtgattgcaacacttgaaaaattgttagttgatatagtg--atatagtaacaactgagtaaaagtgtt 352  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||  |||||||||||| ||||||||||||||    
T  14666535 acactactacaataatgacatttagtaacaaggtgattgcaacacttgaaaaattgttagctgatataatgatatatagtaacaattgagtaaaagtgtt 14666634  T
Q  353 agatccaatacaacaagtaccatccctc 380  Q
    ||||||||||||||||||||||||||||    
T  14666635 agatccaatacaacaagtaccatccctc 14666662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 256 - 379
Target Start/End: Original strand, 17715509 - 17715624
Alignment:
Q  256 cactactataataatgacatttagtaacaaggtgattgcaacacttgaaaaattgttagttgatatagtgatatagtaacaactgagtaaaagtgttaga 355  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||        | |||||||||||||| |||||||||||||||||    
T  17715509 cactactacaataatgacatttagtaataaggtgattgcaacacttgaaaaattgtta--------actgatatagtaacaattgagtaaaagtgttaga 17715600  T
Q  356 tccaatacaacaagtaccatccct 379  Q
    |||||||||||||||| |||||||    
T  17715601 tccaatacaacaagtatcatccct 17715624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 256 - 378
Target Start/End: Complemental strand, 14323252 - 14323138
Alignment:
Q  256 cactactataataatgacatttagtaacaaggtgattgcaacacttgaaaaattgttagttgatatagtgatatagtaacaactgagtaaaagtgttaga 355  Q
    |||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||||         |||||||||||||| ||||||||||||||| |    
T  14323252 cactactacaataatgacttttagcaacaacgtgattgcaacacttgaaaaattgttag--------ctgatatagtaacaattgagtaaaagtgttaca 14323161  T
Q  356 tccaatacaacaagtaccatccc 378  Q
    |||||||||||||||||||||||    
T  14323160 tccaatacaacaagtaccatccc 14323138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 256 - 378
Target Start/End: Complemental strand, 14416262 - 14416148
Alignment:
Q  256 cactactataataatgacatttagtaacaaggtgattgcaacacttgaaaaattgttagttgatatagtgatatagtaacaactgagtaaaagtgttaga 355  Q
    |||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||||         |||||||||||||| ||||||||||||||| |    
T  14416262 cactactacaataatgacttttagcaacaacgtgattgcaacacttgaaaaattgttag--------ctgatatagtaacaattgagtaaaagtgttaca 14416171  T
Q  356 tccaatacaacaagtaccatccc 378  Q
    |||||||||||||||||||||||    
T  14416170 tccaatacaacaagtaccatccc 14416148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 462 - 523
Target Start/End: Complemental strand, 14415989 - 14415928
Alignment:
Q  462 attgagaaacacttttctctctcttccgtcaaaaatcacctttctctctcaccgacatctca 523  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||| || ||||||    
T  14415989 attgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacagagatctca 14415928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 455 - 524
Target Start/End: Original strand, 14666770 - 14666839
Alignment:
Q  455 ataagccattgagaaacacttttctctctcttccgtcaaaaatcacctttctctctcaccgacatctcaa 524  Q
    |||||||||| ||||||||||||||||||||| | | ||||||||| ||||||||||||||| |||||||    
T  14666770 ataagccattcagaaacacttttctctctcttacctaaaaaatcacttttctctctcaccgagatctcaa 14666839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 463 - 511
Target Start/End: Original strand, 11946825 - 11946873
Alignment:
Q  463 ttgagaaacacttttctctctcttccgtcaaaaatcacctttctctctc 511  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  11946825 ttgagaaacacttttctctctcttccctcaaaaatcacctttctctctc 11946873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 535 - 583
Target Start/End: Original strand, 11946942 - 11946990
Alignment:
Q  535 cgaccaccgtcacgctcacaccatcgaccaccgtcaagcttcaccgacg 583  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11946942 cgaccaccgtcacgctcacaccatcaaccaccgtcaagcttcaccgacg 11946990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 536 - 583
Target Start/End: Original strand, 14666876 - 14666923
Alignment:
Q  536 gaccaccgtcacgctcacaccatcgaccaccgtcaagcttcaccgacg 583  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||||||    
T  14666876 gaccaccatcatgctcacaccatcgaccaccgtcaagtttcaccgacg 14666923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 495
Target Start/End: Complemental strand, 14322979 - 14322946
Alignment:
Q  462 attgagaaacacttttctctctcttccgtcaaaa 495  Q
    ||||||||||||||||||||||||||| ||||||    
T  14322979 attgagaaacacttttctctctcttccctcaaaa 14322946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 570
Target Start/End: Complemental strand, 14415873 - 14415840
Alignment:
Q  537 accaccgtcacgctcacaccatcgaccaccgtca 570  Q
    ||||||||||||||||||||||| ||||||||||    
T  14415873 accaccgtcacgctcacaccatcaaccaccgtca 14415840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 6e-51; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 256 - 378
Target Start/End: Complemental strand, 13852477 - 13852355
Alignment:
Q  256 cactactataataatgacatttagtaacaaggtgattgcaacacttgaaaaattgttagttgatatagtgatatagtaacaactgagtaaaagtgttaga 355  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |    
T  13852477 cactactacaataatgacttttagtaacaaggtgattgcaacacttgaaaaattgttagctgatatagtgatatagtaacaattgagtaaaagtgttaca 13852378  T
Q  356 tccaatacaacaagtaccatccc 378  Q
    |||||||||||||||||||||||    
T  13852377 tccaatacaacaagtaccatccc 13852355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 266 - 379
Target Start/End: Original strand, 4848255 - 4848368
Alignment:
Q  266 ataatgacatttagtaacaaggtgattgcaacacttgaaaaattgttagttgatatagtgatatagtaacaactgagtaaaagtgttagatccaatacaa 365  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4848255 ataataacatttagtaacaaggtgattgcaacacttgaaaaattgttagctgatatagtgatatagtaacaattgagtaaaagtgttagatccaatacaa 4848354  T
Q  366 caagtaccatccct 379  Q
    ||||||||||||||    
T  4848355 caagtaccatccct 4848368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 255 - 365
Target Start/End: Complemental strand, 1658961 - 1658851
Alignment:
Q  255 acactactataataatgacatttagtaacaaggtgattgcaacacttgaaaaattgttagttgatatagtgatatagtaacaactgagtaaaagtgttag 354  Q
    ||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||     
T  1658961 acactactacaataatgacttttagtaacatggtgattgcaacacttgaaaaattgttagctgatatagtgatatagtaacaattgagtaaaagtgttac 1658862  T
Q  355 atccaatacaa 365  Q
    ||||| |||||    
T  1658861 atccactacaa 1658851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 455 - 524
Target Start/End: Complemental strand, 1658736 - 1658667
Alignment:
Q  455 ataagccattgagaaacacttttctctctcttccgtcaaaaatcacctttctctctcaccgacatctcaa 524  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||    
T  1658736 ataagcaattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcaccgagatctcaa 1658667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 455 - 513
Target Start/End: Complemental strand, 13852210 - 13852152
Alignment:
Q  455 ataagccattgagaaacacttttctctctcttccgtcaaaaatcacctttctctctcac 513  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  13852210 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctcac 13852152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 535 - 583
Target Start/End: Complemental strand, 1658631 - 1658583
Alignment:
Q  535 cgaccaccgtcacgctcacaccatcgaccaccgtcaagcttcaccgacg 583  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1658631 cgaccaccgtcacgctcacaccatcgaccaccgttaagcttcaccgacg 1658583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 535 - 583
Target Start/End: Complemental strand, 13852089 - 13852041
Alignment:
Q  535 cgaccaccgtcacgctcacaccatcgaccaccgtcaagcttcaccgacg 583  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  13852089 cgaccaccgtcacgctcacaccatcaaccatcgtcaagcttcaccgacg 13852041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 144 - 255
Target Start/End: Complemental strand, 18789014 - 18788903
Alignment:
Q  144 cgtaacaaatctttgcaatattccatcttctcaactaccacacccagtgatcaaaggagacaggctttcgatagtgattctagaagatgattacaatgaa 243  Q
    |||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18789014 cgtaacaaatctttgcaatattccatcttctcaactaccacaactggtgatcaaaggagacaggctttcgatagtgattctagaagatgattacaatgaa 18788915  T
Q  244 gggatgaccgca 255  Q
    ||||||||||||    
T  18788914 gggatgaccgca 18788903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 68
Target Start/End: Complemental strand, 18789087 - 18789052
Alignment:
Q  33 ccgttcctaaaacaaccatagtttctagccatccag 68  Q
    ||||||||||||| ||||||||||||||||||||||    
T  18789087 ccgttcctaaaactaccatagtttctagccatccag 18789052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 256 - 378
Target Start/End: Original strand, 28244496 - 28244618
Alignment:
Q  256 cactactataataatgacatttagtaacaaggtgattgcaacacttgaaaaattgttagttgatatagtgatatagtaacaactgagtaaaagtgttaga 355  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| |    
T  28244496 cactactacaataatgacttttagtaacaaggtgattgcaacacttgaaaaattgttagctgatatagtaatatagtaacaattgagtaaaagtgttaca 28244595  T
Q  356 tccaatacaacaagtaccatccc 378  Q
    |||||||||||||||||||||||    
T  28244596 tccaatacaacaagtaccatccc 28244618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 455 - 512
Target Start/End: Original strand, 28244777 - 28244834
Alignment:
Q  455 ataagccattgagaaacacttttctctctcttccgtcaaaaatcacctttctctctca 512  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  28244777 ataaaccattgagaaacacttttctctctcttccctcaaaaatcacttttctctctca 28244834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 535 - 583
Target Start/End: Original strand, 45349468 - 45349516
Alignment:
Q  535 cgaccaccgtcacgctcacaccatcgaccaccgtcaagcttcaccgacg 583  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45349468 cgaccaccgtcacgctcacaccatcgaccaccgtcaaacttcaccgacg 45349516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 295 - 369
Target Start/End: Original strand, 17629685 - 17629760
Alignment:
Q  295 aacacttgaaaaattgttagttgatatagtgatatagtaacaactgagtaaaagtgttaga-tccaatacaacaag 369  Q
    ||||||||| |||||||||| ||||| ||||||||||||| || ||||||||||||||||| ||||||||| ||||    
T  17629685 aacacttgagaaattgttagctgatacagtgatatagtaagaattgagtaaaagtgttagattccaatacaccaag 17629760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 535 - 583
Target Start/End: Original strand, 28244898 - 28244946
Alignment:
Q  535 cgaccaccgtcacgctcacaccatcgaccaccgtcaagcttcaccgacg 583  Q
    ||||||||| ||||||||||||||| |||||| ||||||||||||||||    
T  28244898 cgaccaccgacacgctcacaccatcaaccaccatcaagcttcaccgacg 28244946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 535 - 583
Target Start/End: Original strand, 17629897 - 17629944
Alignment:
Q  535 cgaccaccgtcacgctcacaccatcgaccaccgtcaagcttcaccgacg 583  Q
    |||||||||||||||||||||| ||||||| |||| |||||||||||||    
T  17629897 cgaccaccgtcacgctcacaccctcgacca-cgtcgagcttcaccgacg 17629944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Original strand, 45349374 - 45349411
Alignment:
Q  474 ttttctctctcttccgtcaaaaatcacctttctctctc 511  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  45349374 ttttctctctcttccctcaaaaatcacttttctctctc 45349411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 256 - 378
Target Start/End: Original strand, 9237855 - 9237977
Alignment:
Q  256 cactactataataatgacatttagtaacaaggtgattgcaacacttgaaaaattgttagttgatatagtgatatagtaacaactgagtaaaagtgttaga 355  Q
    |||||||| |||||| || |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |    
T  9237855 cactactacaataataacttttagtaagaaggtgattgcaacacttgaaaaattgttagctgatatagtgatatagtaacaattgagtaaaagtgttaca 9237954  T
Q  356 tccaatacaacaagtaccatccc 378  Q
    |||||||||||||||||||||||    
T  9237955 tccaatacaacaagtaccatccc 9237977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 462 - 523
Target Start/End: Original strand, 9238130 - 9238191
Alignment:
Q  462 attgagaaacacttttctctctcttccgtcaaaaatcacctttctctctcaccgacatctca 523  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||| || ||||||    
T  9238130 attgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacagagatctca 9238191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 535 - 583
Target Start/End: Original strand, 9238244 - 9238292
Alignment:
Q  535 cgaccaccgtcacgctcacaccatcgaccaccgtcaagcttcaccgacg 583  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9238244 cgaccaccgtcacgctcacaccatcaaccaccgtcaagcttcaccgacg 9238292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0838 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 256 - 378
Target Start/End: Complemental strand, 303 - 181
Alignment:
Q  256 cactactataataatgacatttagtaacaaggtgattgcaacacttgaaaaattgttagttgatatagtgatatagtaacaactgagtaaaagtgttaga 355  Q
    ||||| || |||||| || |||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| |    
T  303 cactattacaataataacttttagtaacaaggtgattgcaacatttgaaaaattgttagctgatataatgatatagtaacaattgagtaaaagtgttaca 204  T
Q  356 tccaatacaacaagtaccatccc 378  Q
    |||||||||||||||||||||||    
T  203 tccaatacaacaagtaccatccc 181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0838; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 495
Target Start/End: Complemental strand, 34 - 1
Alignment:
Q  462 attgagaaacacttttctctctcttccgtcaaaa 495  Q
    ||||||||||||||||||||||||||| ||||||    
T  34 attgagaaacacttttctctctcttccctcaaaa 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0832 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 256 - 378
Target Start/End: Complemental strand, 334 - 212
Alignment:
Q  256 cactactataataatgacatttagtaacaaggtgattgcaacacttgaaaaattgttagttgatatagtgatatagtaacaactgagtaaaagtgttaga 355  Q
    ||||| || |||||| || |||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| |    
T  334 cactattacaataataacttttagtaacaaggtgattgcaacatttgaaaaattgttagctgatataatgatatagtaacaattgagtaaaagtgttaca 235  T
Q  356 tccaatacaacaagtaccatccc 378  Q
    |||||||||||||||||||||||    
T  234 tccaatacaacaagtaccatccc 212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0832; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 462 - 523
Target Start/End: Complemental strand, 65 - 4
Alignment:
Q  462 attgagaaacacttttctctctcttccgtcaaaaatcacctttctctctcaccgacatctca 523  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||| || ||||||    
T  65 attgagaaacacttttctctctcttccctcaaaaatcacttttctctctcacagagatctca 4  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 455 - 524
Target Start/End: Complemental strand, 24047091 - 24047022
Alignment:
Q  455 ataagccattgagaaacacttttctctctcttccgtcaaaaatcacctttctctctcaccgacatctcaa 524  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| |||||||    
T  24047091 ataagctattgagaaacacttttctctctcttccctcaaaaatcacttttctctcttaccgagatctcaa 24047022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 254 - 305
Target Start/End: Original strand, 31406124 - 31406175
Alignment:
Q  254 cacactactataataatgacatttagtaacaaggtgattgcaacacttgaaa 305  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31406124 cacactactacaataatgacatttagtaacaaggtgattgcaacacttgaaa 31406175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 455 - 524
Target Start/End: Original strand, 31406330 - 31406401
Alignment:
Q  455 ataagccattgagaaacacttttctctctcttccgtcaaaaatcacctttctc--tctcaccgacatctcaa 524  Q
    ||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||  ||||||||| |||||||    
T  31406330 ataagacattgagaaacacttttctctctcttccctcaaaaaacacttttctctctctcaccgagatctcaa 31406401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 24047251 - 24047200
Alignment:
Q  329 tagtaacaactgagtaaaagtgttagatccaatacaacaagtaccatccctc 380  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  24047251 tagtaacaattgagtaaaagtgttagatccgatacagcaagtaccatccctc 24047200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 343 - 380
Target Start/End: Original strand, 31406181 - 31406218
Alignment:
Q  343 taaaagtgttagatccaatacaacaagtaccatccctc 380  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  31406181 taaaagtgttagatccaatacaacaagtaacatccctc 31406218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University