View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18888_high_7 (Length: 318)

Name: NF18888_high_7
Description: NF18888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18888_high_7
NF18888_high_7
[»] chr4 (2 HSPs)
chr4 (1-301)||(1981778-1982079)
chr4 (240-301)||(13269652-13269715)
[»] chr1 (1 HSPs)
chr1 (109-202)||(37089377-37089469)
[»] scaffold0201 (1 HSPs)
scaffold0201 (103-190)||(21030-21117)
[»] chr3 (1 HSPs)
chr3 (103-178)||(23488423-23488498)
[»] chr5 (1 HSPs)
chr5 (186-265)||(10169476-10169556)
[»] chr6 (1 HSPs)
chr6 (186-233)||(24140276-24140323)
[»] chr2 (1 HSPs)
chr2 (185-244)||(29924061-29924120)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 1982079 - 1981778
Alignment:
Q  1 tcgtcgatctctgccctttctctggtgtcgtcccctctcccgaaacctgtagatccacaatctccagtagaaaagaattggtctcaaatcccaccattcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1982079 tcgtcgatctctgccctttctctggtgtcgtcccctctcccgaaaccagtagatccacaatctccagtagaaaagaattgttctcaaatcccaccattcc 1981980  T
Q  101 ccccacctccaaaaccacctaaatgagtctctatttatggaatctttgaccttgaggacaaggtcagttttgaggagcgtagcagtgatagctttggtca 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1981979 ccc-acctccaaaaccacctaaatgagtctctatttatggaatctttgaccttgaggacaaggtcagttttgaggagcgtagcagtgatagctttggtca 1981881  T
Q  201 agaggagacattgttagacactggacccgcgatcatgacgatgctaaa-tgaagggattacgttactat-cggtaataattagattagaaaaattgttac 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||| |||||||||||||| ||||    
T  1981880 agaggagacattgttagacactggacccgcgatcatgacgatgctaaagttaagggattacgttactatccggtaataataagattagaaaaattattac 1981781  T
Q  299 tat 301  Q
    |||    
T  1981780 tat 1981778  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 301
Target Start/End: Complemental strand, 13269715 - 13269652
Alignment:
Q  240 gatgctaaa-tgaagggattacgttactatc-ggtaataattagattagaaaaattgttactat 301  Q
    ||||||||| ||||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||    
T  13269715 gatgctaaagtgaagggattatgttactatccggtaacaattagattagcaaaattgttactat 13269652  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 37089469 - 37089377
Alignment:
Q  109 ccaaaaccacctaaatgagtctctatttatggaatctttgaccttgaggacaaggtcagttttgaggagcgtagcagtgatagctttggtcaag 202  Q
    |||||||||| | ||||  |||||||||||||||||||||||||| || ||||||||| |||||||||||| || |||||||||||||||||||    
T  37089469 ccaaaaccacatgaatgcatctctatttatggaatctttgaccttaag-acaaggtcaattttgaggagcggagtagtgatagctttggtcaag 37089377  T

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Target: scaffold0201 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 21030 - 21117
Alignment:
Q  103 ccacctccaaaaccacctaaatgagtctctatttatggaatctttgaccttgaggacaaggtcagttttgaggagcgtagcagtgata 190  Q
    |||||||||||||||||||| || ||||||||||| |||||| ||||| ||||||||||||||| |||||| ||||| || |||||||    
T  21030 ccacctccaaaaccacctaattgcgtctctatttacggaatcattgactttgaggacaaggtcaattttgaagagcggagtagtgata 21117  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 103 - 178
Target Start/End: Original strand, 23488423 - 23488498
Alignment:
Q  103 ccacctccaaaaccacctaaatgagtctctatttatggaatctttgaccttgaggacaaggtcagttttgaggagc 178  Q
    |||||||||||||||||||| ||  |||||||||| |||||| ||||| ||||||||||||||| |||||| ||||    
T  23488423 ccacctccaaaaccacctaattgcatctctatttacggaatcattgactttgaggacaaggtcaattttgaagagc 23488498  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 265
Target Start/End: Complemental strand, 10169556 - 10169476
Alignment:
Q  186 tgatagctttggtcaagaggagacattgttagacactggacccgcgatcatgacgatgctaaa-tgaagggattacgttac 265  Q
    |||||||||||| |||||||||   |||||||| || |||||||| ||||||||||||||||| |||||| ||||| ||||    
T  10169556 tgatagctttgggcaagaggaggtgttgttagataccggacccgctatcatgacgatgctaaagtgaaggcattacattac 10169476  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 24140323 - 24140276
Alignment:
Q  186 tgatagctttggtcaagaggagacattgttagacactggacccgcgat 233  Q
    ||||||||||| |||||| |||||||||||||| || |||||||||||    
T  24140323 tgatagctttgatcaagacgagacattgttagataccggacccgcgat 24140276  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 29924120 - 29924061
Alignment:
Q  185 gtgatagctttggtcaagaggagacattgttagacactggacccgcgatcatgacgatgc 244  Q
    ||||||| |||||||||||||||   |||||||| || ||||||||||||||||| ||||    
T  29924120 gtgatagatttggtcaagaggaggtgttgttagataccggacccgcgatcatgacaatgc 29924061  T

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