View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18888_low_10 (Length: 316)
Name: NF18888_low_10
Description: NF18888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18888_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 300
Target Start/End: Original strand, 7652046 - 7652337
Alignment:
| Q |
9 |
gattattctgatgaggagtttgattatgaaatagagaatcctttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatg |
108 |
Q |
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| T |
7652046 |
gattattctgatgaggagtttgattatgaaatagagaatactttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatg |
7652145 |
T |
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| Q |
109 |
ctcaaaagatcagtgcaggaaatggtggaggcattgaaataaaaggtggtggcggaagtggtggagtacctatgcctgttcaagttcattccttggctgg |
208 |
Q |
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| T |
7652146 |
ctcaaaagatcagtgcaggaaatggtggaggcattgaaataaaaggtggtggcggaagtgttggaggacctatgcctgttcaagttcattccttggctgg |
7652245 |
T |
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| Q |
209 |
tggaaatgggaatggaggaaagaaaggtggtggtggcgacggtggaaataatcagagtcagaatcaaggtggaatgccagagggtaaaaatg |
300 |
Q |
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| T |
7652246 |
tggaaatgggaatggaggaaagaaaggtggtggtggcgaaggtggaaataatcagattcagaatcaaggtggaatgccagaaggtaaaaatg |
7652337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 7657456 - 7657560
Alignment:
| Q |
12 |
tattctgatgaggagtttgattatgaaatagagaatcctttgaataaaatgaaactatctatggggagtaatggtcctgctcacatgatgatgaatgctc |
111 |
Q |
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| T |
7657456 |
tattctgatgaggagtttgatgatgagatggaacatcctttgaataagatgaaactacctatggggggtaatggtcctgctcacatgatgatgaatgctc |
7657555 |
T |
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| Q |
112 |
aaaag |
116 |
Q |
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| T |
7657556 |
aaaag |
7657560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 7657639 - 7657695
Alignment:
| Q |
225 |
ggaaagaaaggtggtggtggcgacggtggaaataatcagagtcagaatcaaggtgga |
281 |
Q |
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| T |
7657639 |
ggaaagaaaggtggtggtggtggtggcggaaataatcagagtcagaatcaaggtgga |
7657695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 244
Target Start/End: Complemental strand, 48572934 - 48572896
Alignment:
| Q |
206 |
tggtggaaatgggaatggaggaaagaaaggtggtggtgg |
244 |
Q |
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| T |
48572934 |
tggtggaaatggcaatggaggaaagaaaggtggtggtgg |
48572896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 48538612 - 48538558
Alignment:
| Q |
210 |
ggaaatgggaatggaggaaagaaaggtggtggtggcgacggtggaaataatcaga |
264 |
Q |
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| T |
48538612 |
ggaaatggcaatggaggaaagaaaggtggcggtggtggtggaggaaataatcaga |
48538558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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