View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18888_low_12 (Length: 269)
Name: NF18888_low_12
Description: NF18888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18888_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 34315681 - 34315447
Alignment:
| Q |
19 |
aaccatgaaagctgtggttgcacgaattctatgacaataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaagattttga |
118 |
Q |
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| T |
34315681 |
aaccatgaaagctgtggttgcacgaattctatgacaataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaagattttgt |
34315582 |
T |
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| Q |
119 |
acagactctacagtgtattgttcttgattatctatgaaggaacttgaaagtgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatc |
218 |
Q |
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| T |
34315581 |
acagactctacagtgtattgttcttgattatctattaaggaacttgaaagtgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatc |
34315482 |
T |
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| Q |
219 |
ccaaagatttagcacaatgcttctgttctcctatg |
253 |
Q |
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| T |
34315481 |
ccaaagatttagcacaatgcttctgttctcctatg |
34315447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 34251276 - 34251060
Alignment:
| Q |
19 |
aaccatgaaagctgtggttgcacgaattctatgacaataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaagattttga |
118 |
Q |
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| T |
34251276 |
aaccataaaagctgttgttccatgaatttcatgacaataaaatacaaccttttgaaagttcaacctatgacacatcactgctttctctccaagattttga |
34251177 |
T |
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| Q |
119 |
acagactctacagtgtattgttcttgattatctatgaaggaacttgaaagtgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatc |
218 |
Q |
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| T |
34251176 |
actgactctattttgtattgttcatgtttatcaatgaaggaacttgaaagtgcttgaatattttttccaagcttagaaattgaaaatccgattaatgttc |
34251077 |
T |
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| Q |
219 |
ccaaagatttagcacaa |
235 |
Q |
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| T |
34251076 |
ctaaggattttgcacaa |
34251060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 49 - 235
Target Start/End: Complemental strand, 34241484 - 34241298
Alignment:
| Q |
49 |
atgacaataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaagattttgaacagactctacagtgtattgttcttgatta |
148 |
Q |
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| T |
34241484 |
atgacaataaaatacaactttttgaaagttcaacctatgacacatcactgctttgtctccaagattttgcaccgattctattttgtattgttcatgttta |
34241385 |
T |
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| Q |
149 |
tctatgaaggaacttgaaagtgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatcccaaagatttagcacaa |
235 |
Q |
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| T |
34241384 |
tcaatgaaggaacttgaaagtgattgaatattttttccaagttttgaaattgcaaatccaattaatgttcctaaggattttgcacaa |
34241298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 110
Target Start/End: Complemental strand, 17004298 - 17004238
Alignment:
| Q |
50 |
tgacaataatatacaaccttttggaaattcaacctgtgacacatcacccctttatctccaa |
110 |
Q |
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||||||||| ||||||| |||| |||||| || || |||||||||||| |||| ||||||| |
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| T |
17004298 |
tgacaataaaatacaacatttttgaaatttaatctatgacacatcaccactttgtctccaa |
17004238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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