View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18888_low_2 (Length: 643)
Name: NF18888_low_2
Description: NF18888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18888_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 1 - 625
Target Start/End: Complemental strand, 35783219 - 35782595
Alignment:
| Q |
1 |
caatacattcaaacaatcatttatcatcttacaaagcccacacaagtgacattttacgagacaaaaatggtttcgtgaggaccagattattgttgcatag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35783219 |
caatacattcaaacaatcatttatcatcttacaaagcccacacaagtgacattttacgagacaaaaatggtttcgtgaggaccagattattgttgcatag |
35783120 |
T |
|
| Q |
101 |
cacatgaaatgagctcttgcttggagagacacctactagattatagcattgtttgaattgaaactaaaaaatgatgtatttgggtgaacatttcataaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35783119 |
cacatgaaatgagctcttgcttggagagacacctactagattatagcattgtttgaattgaaactaaaaaatgatgtattcgggtgaacatttcataaaa |
35783020 |
T |
|
| Q |
201 |
atgattttgattggttttgtaaatttgatttgtttaaaattgagtttcagctaaactgacttatgtgtaaatattttcactacaaaaggaattgggtaaa |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35783019 |
atgattttgattggttttgtaaattttatttgtttaaaattgagtttcagctaaactgacttatgtgtaaatattttcactacaaaaggaattgggtaaa |
35782920 |
T |
|
| Q |
301 |
actcaatttaaattcttcaactaaacgcaaaagatattttttaatcacttccactcaaaccgaaatttgatggagaaactaactgactcgttaattttcc |
400 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35782919 |
actcaatttaaattcttcaactatacgcaaaagatattttttaatcacttccactcaaaccgaaatttgatggagaaattaactgactcgttaattttcc |
35782820 |
T |
|
| Q |
401 |
tacaatcacgttttagagatacaatcaattctaacacttctcactgtgaacatacaaaataactcaactaaacactatacaaaaatgacattaatttcta |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35782819 |
tacaatcacgttttagagatacaatcaattctaacacttctcactgtgaacatacaaaataactcaactaaacactatacaaaaatgacattaatttcta |
35782720 |
T |
|
| Q |
501 |
aacactgatgctgtaaaactactttataaacgcatccaatcaaatcacatcatagagcaattttcttatgacaagtatctacatagcgcagtttgattgg |
600 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35782719 |
aaaactgatgctgtaaaactactttataaacgcatccaatcaaatcacatcatagagcaattttcttatgacaagtatctacatagcgcagtttgattgg |
35782620 |
T |
|
| Q |
601 |
atgcgtgtgtaaaaatgttttacat |
625 |
Q |
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||||||||||||||||||||||||| |
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| T |
35782619 |
atgcgtgtgtaaaaatgttttacat |
35782595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 624
Target Start/End: Original strand, 19711225 - 19711257
Alignment:
| Q |
592 |
tttgattggatgcgtgtgtaaaaatgttttaca |
624 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
19711225 |
tttgattggatgcgtgtctaaaaatgttttaca |
19711257 |
T |
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