View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18888_low_3 (Length: 640)
Name: NF18888_low_3
Description: NF18888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18888_low_3 |
 | |
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| [»] scaffold0495 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 11 - 622
Target Start/End: Original strand, 31662816 - 31663419
Alignment:
| Q |
11 |
cagagacacaacctcctgaaacaccaaacaagttgcgcctagcgcatgggacagaatgcaacaaaaaatttccaacttccaacatgagatttcaagacat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31662816 |
cagagacacaacctcctgaaacaccaaacaagttgcgcctagcgcatgggacagaatgcaacaaaaaatttccaacttccaatatgagatttcaagacat |
31662915 |
T |
|
| Q |
111 |
atctcgacgtaatgttcgataaaattagcaattgataaatatgaaacaacataaaaacatatttttaattaagataacaagggtaaaattgagataaaaa |
210 |
Q |
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||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31662916 |
atctcgacgtaatgttcgataaaattaatagttgataaatatgaaacaacataaaaacatatttttaattaagataacaagggtaaaattgagataaaaa |
31663015 |
T |
|
| Q |
211 |
ttataatattgaacgtagcttattaaaaaatgttacaagtccgtgaaaaaatttgttatcaaagaggtctgttttggtaatacgagcgtataacgaagca |
310 |
Q |
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|
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31663016 |
ttataatattgaaagtggcttattaaaaaatgttacaagtccgtgaaaaaatttgttatcaaagaggtctgttttggtaatacgagcgtataacgaagca |
31663115 |
T |
|
| Q |
311 |
aactcgaaaacttatctagtcaaacagagccattagtcgtgcccttttcactagcatgttgtgtgttctgataatgatttttgtgtttactgtataatat |
410 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31663116 |
aactcgaaaacttatctagtcaaacagagccattagtagtgcccttttcactagcatgttgtgtgttctgataatgatttttgtgtttactgtataatat |
31663215 |
T |
|
| Q |
411 |
gcagattgatattattgctagcctagtgagtgggagacttgtacgtgaaaggattggtcaagccatgttgaatgcggttcaaagtcaggtaattaaattg |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31663216 |
gcagattgatattattgctagcctagtgagtgggagacttgtacgtgaaaggattggtcaagccatgttgaatgcggttcaaagtcaggtaattaaat-- |
31663313 |
T |
|
| Q |
511 |
atttatccatattgagagacataaattttggttatgaataattgaatatacac-aacttacttatattatgcc-ttaatttgctctctattctcagatgg |
608 |
Q |
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| ||||||||||||||||||||||||||| | |||| |||||| |||| ||||||||||| ||||||||||||| |||||||||||| |
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| T |
31663314 |
--------acggtgagagacataaattttggttatgaattactgaaaatacacttgcttatatatattatgcctttaatttgctctccattctcagatgg |
31663405 |
T |
|
| Q |
609 |
gtgcaggtgaaatg |
622 |
Q |
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|||||||||||||| |
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| T |
31663406 |
gtgcaggtgaaatg |
31663419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 29861452 - 29861408
Alignment:
| Q |
172 |
tttttaattaagataacaagggtaaaattgagataaaaattataa |
216 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||| |||||| |||| |
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|
| T |
29861452 |
ttttcaattaagattacaagggtaaaattgagagaaaaatgataa |
29861408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 32448143 - 32448181
Alignment:
| Q |
170 |
tatttttaattaagataacaagggtaaaattgagataaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32448143 |
tatttttaattaagataacaagggtaaaattgagataaa |
32448181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 10232549 - 10232510
Alignment:
| Q |
158 |
aacataaaaacatatttttaattaagataacaagggtaaa |
197 |
Q |
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| T |
10232549 |
aacataaaaatatatttttaattaagattacaagggtaaa |
10232510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 408 - 501
Target Start/End: Complemental strand, 9084533 - 9084440
Alignment:
| Q |
408 |
tatgcagattgatattattgctagcctagtgagtgggagacttgtacgtgaaaggattggtcaagccatgttgaatgcggttcaaagtcaggta |
501 |
Q |
| |
|
||||||||||||| |||||| |||| | ||||||| |||||||| ||||| ||||| |||| || ||| ||| ||| ||||||||||||||| |
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| T |
9084533 |
tatgcagattgatgttattgttagcttgttgagtggaagacttgtgcgtgagaggataggtcctgcaatgctgagtgctgttcaaagtcaggta |
9084440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 5657082 - 5657115
Alignment:
| Q |
177 |
aattaagataacaagggtaaaattgagataaaaa |
210 |
Q |
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|||||||||||||| ||||||||||||||||||| |
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| T |
5657082 |
aattaagataacaatggtaaaattgagataaaaa |
5657115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 2942038 - 2942002
Alignment:
| Q |
172 |
tttttaattaagataacaagggtaaaattgagataaa |
208 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||| |
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|
| T |
2942038 |
ttttcaattaagattacaagggtaaaattgagataaa |
2942002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 6588450 - 6588414
Alignment:
| Q |
172 |
tttttaattaagataacaagggtaaaattgagataaa |
208 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||| |
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| T |
6588450 |
tttttaattaagattacaagagtaaaattgagataaa |
6588414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 17902770 - 17902730
Alignment:
| Q |
172 |
tttttaattaagataacaagggtaaaattgagataaaaatt |
212 |
Q |
| |
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|||| |||||||||||||||||| ||||||||| ||||||| |
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|
| T |
17902770 |
ttttaaattaagataacaagggtgaaattgagagaaaaatt |
17902730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0495 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0495
Description:
Target: scaffold0495; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 9272 - 9233
Alignment:
| Q |
158 |
aacataaaaacatatttttaattaagataacaagggtaaa |
197 |
Q |
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|||||||||| ||||||||||||||||| ||||||||||| |
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| T |
9272 |
aacataaaaatatatttttaattaagattacaagggtaaa |
9233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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