View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18888_low_6 (Length: 401)
Name: NF18888_low_6
Description: NF18888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18888_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 47261975 - 47262356
Alignment:
| Q |
1 |
aacaaaaacttaggaaattttacagatacagtataaccacaactaaatgataatgatctatattctatatatctaccaagtaccaaccacataaagatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47261975 |
aacaaaaacttaggaaattttacagatacagtataaccacaactaaatgataatgatctatattctatatatctaccaagtaccaaccaaataaagatta |
47262074 |
T |
|
| Q |
101 |
atatcatcaaaacttgacaaaagttgaagaaaacagtgtccaagtccaactaaccttatgcttggtccggagtaaccaaagctatttctagcaaccaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262075 |
atatcatcaaaacttgacaaaagttgaagaaaacagtgtccaagtccaactaaccttatgcttggtccggagtaaccaaagctatttctagcaaccaaac |
47262174 |
T |
|
| Q |
201 |
caatagcaaagttgttaaaatcagtggtattatacaaggaatctccaagaatcaaaaactccaaagcagaaacaaacgggtcagaatccgtataactatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262175 |
caatagcaaagttgttaaaatcagtggtattatacaaggaatctccaagaatcaaaaactccaaagcagaaacaaacgggtcagaatccgtataactatt |
47262274 |
T |
|
| Q |
301 |
cgacccgatacaaaaactcataaacttccccacagccaaaaataccccttcataaaaactcgagtttccattagcataatcc |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262275 |
cgacccgatacaaaaactcataaacttccccacagccaaaaataccccttcataaaaactcgagtttccattagcataatcc |
47262356 |
T |
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