View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18888_low_7 (Length: 400)
Name: NF18888_low_7
Description: NF18888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18888_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 9 - 385
Target Start/End: Original strand, 32967977 - 32968353
Alignment:
| Q |
9 |
atcatcagaaactttggtaggtgaagtggaacatgcagaagagacacaattccaagaaaccctatttccaatcaccaaaaacacaacctcacctcttcaa |
108 |
Q |
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| T |
32967977 |
atcatcagaaactatggtaggtgaagtggaacatgcagaagagacacaattccaagaaaccctatttccaatcaccaaaaacacaacctcacctcttcaa |
32968076 |
T |
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| Q |
109 |
aacacactcatgtctcaaaaatcagtgtccttttcaaacctattagatgctatggactactccatgttaagcagcttcttatctgaaaattccaacaacc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32968077 |
aacacactcatgtctcaaaaatcagtgtccttttcaaacctattagatgctatggactactccatgttaagcagcttcttatctgaaaattccaacaacc |
32968176 |
T |
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| Q |
209 |
catcaggaattggaacaagttcaggtttcaacactgaaaattttaaccaacaacaatcttcccaaatcaacacttgcaacaattacatgtctcagaagaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32968177 |
catcaggaattggaacaagttcaggtttcaacactgaaaattttaaccaacaacaatcttcccatatcaacacttgcaacaattacatgtctcagaagaa |
32968276 |
T |
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| Q |
309 |
tcctcaatccaacactttaaagcaccagctttcaaacgtagatgaagacatgttatacccatcaaagaagtacttga |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32968277 |
tcctcaatccaacactttaaagcaccagctttcaaacgtagatgaagacatgttatacccatcaaagaagtacttga |
32968353 |
T |
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