View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18889_high_11 (Length: 331)
Name: NF18889_high_11
Description: NF18889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18889_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 42747464 - 42747169
Alignment:
| Q |
17 |
aggtaagtgttaccatgacatcatagatagaagcagtgagaccaaaatcagaaacagcacgaccaaacccaacgaacaaatcccgttcaggagaaacagg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42747464 |
aggtaagtgttaccatgacatcatagatagaagcagtgagaccaaaatcagaaacagcacgaccaaacccaacgaacaaatcccgttcaggagaaacagg |
42747365 |
T |
|
| Q |
117 |
agtgaagaaatcaacaacagaagataaagattcatctaaaccatcaacatgacgaggtttacagaaaacagagacaagaacatcactatgagaaagagca |
216 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42747364 |
agtaaagaaatcaacaacagaagataaagattcatctaaaccatcaacatgatgaggtttacagaaaacagagacaagaacatcactatgagaaagagca |
42747265 |
T |
|
| Q |
217 |
atgcgaagcttgttgatatcaacttgttcagggttgtcagagatattaaagttgggaaatctgtgaaaagagtggttgcatatggagcagaggttt |
312 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42747264 |
atgcgaagcttgttgatatcaacttgctcaggggtgtcagagatattaaggttggggaatctgtgaaaagagtggttgcatatggagcagaggttt |
42747169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University