View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18889_high_17 (Length: 236)
Name: NF18889_high_17
Description: NF18889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18889_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30667029 - 30666809
Alignment:
| Q |
1 |
aaatgaaattttcatgaaattaaaattagtttaaatgaaattacataaatattacctctctttatctaatgtattgatgctccaccatggatctttccat |
100 |
Q |
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| T |
30667029 |
aaatgaaattttcatgaaattaaaattagtttaaatgaaattacataaatattacctctctttatctaatgtattgatgctccaccatggatctttccat |
30666930 |
T |
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| Q |
101 |
gaaataaaattattttcctctgcagatatatatgaaagaggtttaatgaaaatgtgtatgaacacaacaaaggcagttaagtgtaagataggttaaatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
30666929 |
gaaataaaattattttcctctgcagatatatatgaaagaggtttaatgaaaatgtgtatgaacatagcaaaggcagttaagtgtaagataggttaaatag |
30666830 |
T |
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| Q |
201 |
tggccagggccggcttgtgct |
221 |
Q |
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| T |
30666829 |
tggccagggccggcttgtgct |
30666809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 30706286 - 30706195
Alignment:
| Q |
1 |
aaatgaaattttcatgaaattaaaattagtttaaatgaaattacataaatattacctctctttatctaatgtattgatgctccaccatggatctt |
95 |
Q |
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||||||||||| ||| |||||||||||| |||||||||||| || || ||| ||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
30706286 |
aaatgaaatttacatcaaattaaaattaatttaaatgaaatcacgtatata---cctatctttatctaatgcattgatgctccaccatggatctt |
30706195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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