View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18889_high_2 (Length: 521)
Name: NF18889_high_2
Description: NF18889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18889_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 336
Target Start/End: Complemental strand, 25515882 - 25515557
Alignment:
| Q |
13 |
aatattgccctacaaagaaaaatgtcatactgttaaatgttaggatgcactgctttccttttgggattggattcagaatcactatgattcatctttgttc |
112 |
Q |
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| T |
25515882 |
aatattgccttacaaagaaaaatgtcatactgttaaatgttaggatgcactgctttccttttgggattggattcagaatcactatgattcatctttgttc |
25515783 |
T |
|
| Q |
113 |
ttannnnnnncaaagtgtgatccgagtttgaccattcttaatcaagtcatcatacaatccaccttgagaccagcctccaccattttgttaattatcatca |
212 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25515782 |
ttatttttttcaaagtgtgatccgagtttgaccattcttaatcaagtcatcatacaatccaccttgagaccagcctccaccattttgttaattatcatca |
25515683 |
T |
|
| Q |
213 |
aagcatcatggatcctatccactttaatatatgcagcaaacaaagttgtgtgt--gcgtgcttatccggggtcatagacatggagtacatctcttgaaat |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25515682 |
aagcatcatggatcctatccactttaatatatgcagcaaacaaagttgtgtgtgcgcgcgcttatccggggtcatagacatggagtacatctcttgaaat |
25515583 |
T |
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| Q |
311 |
agattctcagcttcagacaacatatc |
336 |
Q |
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|||||||||||||||||||||||||| |
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| T |
25515582 |
agattctcagcttcagacaacatatc |
25515557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 355 - 503
Target Start/End: Complemental strand, 25515476 - 25515328
Alignment:
| Q |
355 |
gttccaactttcttcaaagttgcaagggcttcatcaaccttaccaagcttgaagcattcattgaccatcacaataaaagtgttagagtcaacaccatgaa |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25515476 |
gttccaactttcttcaaagttgcaagggcttcatcaaccttaccaagcttgaagcattcattgaccatcacaataaaagtgttagagtcaacaccatgaa |
25515377 |
T |
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| Q |
455 |
aagtgggaggtgtgtgattgtctaacatgtcatgaaacaagtcctaagc |
503 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25515376 |
aagtgggaggtgtgtgattgtctaacatgtcatgaaacaagtcccaagc |
25515328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 337 - 503
Target Start/End: Original strand, 25526922 - 25527088
Alignment:
| Q |
337 |
ggcttagaatcaggcttggttccaactttcttcaaagttgcaagggcttcatcaaccttaccaagcttgaagcattcattgaccatcacaataaaagtgt |
436 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | |||||||| | ||||||||| |
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| T |
25526922 |
ggcttagaatcaggtttggttccaactttcttcaaagttgcaagggcttcatcaaccttaccgagcttcaagcattcctcgaccatcaaagtaaaagtgt |
25527021 |
T |
|
| Q |
437 |
tagagtcaacaccatgaaaagtgggaggtgtgtgattgtctaacatgtcatgaaacaagtcctaagc |
503 |
Q |
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| T |
25527022 |
cagagtcgacaccatgaaaagtggaaggcgtgtgattgtctaacatgtcatgaaacaagtcccaagc |
25527088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 341 - 503
Target Start/End: Original strand, 25534958 - 25535120
Alignment:
| Q |
341 |
tagaatcaggcttggttccaactttcttcaaagttgcaagggcttcatcaaccttaccaagcttgaagcattcattgaccatcacaataaaagtgttaga |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| ||||||||||| ||| |
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| T |
25534958 |
tagaatcaggcttggttccaactttcttcaaagttgcaagggcttcatcaatcttaccaagcttcaagcattcatcgaccatcaaaataaaagtgtcaga |
25535057 |
T |
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| Q |
441 |
gtcaacaccatgaaaagtgggaggtgtgtgattgtctaacatgtcatgaaacaagtcctaagc |
503 |
Q |
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|| ||| ||||||||||||||||||| ||||||||||||||| |||||||||||||| |||| |
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| T |
25535058 |
gttgacagcatgaaaagtgggaggtgtatgattgtctaacatgccatgaaacaagtcccaagc |
25535120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 31 - 336
Target Start/End: Original strand, 25534592 - 25534898
Alignment:
| Q |
31 |
aaaatgtcatactgttaaatgttaggatgcactgctttccttttgggattggattcagaatcactatgattcatctttgttcttannnnnnn--caaagt |
128 |
Q |
| |
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|||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||| || ||| | |||||| |
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| T |
25534592 |
aaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggattggattcagaatc-ctttgattcatcattcttcctcttcttttttcaaagt |
25534690 |
T |
|
| Q |
129 |
gtgatccgagtttgaccattcttaatcaagtcatcatacaatccaccttgagaccagcctccaccattttgttaattatcatcaaagcatcatggatcct |
228 |
Q |
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|| | ||||| |||||||||||||||||| ||| || | |||||||||||||| |||||| ||| |||||| |||| ||||||||| |||||| |
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| T |
25534691 |
tcgacctgagttggaccattcttaatcaagtaatcgaaccaaccaccttgagaccaccctccatcatgttgttataagtcatgtaagcatcatcgatcct |
25534790 |
T |
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| Q |
229 |
atccactttaatatatgcagcaaacaaagttgtgtgtgcgtgcttatccggggtcatagacatggagtacatctcttgaaatagattctcagcttcagac |
328 |
Q |
| |
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|| || ||||| |||| || |||| | ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25534791 |
attcagtttaaaatatctgtgaatcaaaaacgagtgtgtccacacatccggagtcatagacatggagtacatctcttgaaatagattctcagcttcagac |
25534890 |
T |
|
| Q |
329 |
aacatatc |
336 |
Q |
| |
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|||||||| |
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| T |
25534891 |
aacatatc |
25534898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 25526588 - 25526710
Alignment:
| Q |
31 |
aaaatgtcatactgttaaatgttaggatgcactgctttccttttgggattggattcagaatcactatgattcatctttgttcttannnnnnncaaagtgt |
130 |
Q |
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|||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||| || |||||| |||||| |
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| T |
25526588 |
aaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggattggattcagaatccctttgattcatcattcttctta----tttcaaagttc |
25526683 |
T |
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| Q |
131 |
gatccgagtttgaccattcttaatcaa |
157 |
Q |
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|||||||||| |||||||||||||||| |
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| T |
25526684 |
gatccgagttggaccattcttaatcaa |
25526710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 25526804 - 25526866
Alignment:
| Q |
274 |
atccggggtcatagacatggagtacatctcttgaaatagattctcagcttcagacaacatatc |
336 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25526804 |
atccggggtcatagacatggagtacatatcttgaaatagattctcagcttcagacaacatatc |
25526866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 25541071 - 25541117
Alignment:
| Q |
13 |
aatattgccctacaaagaaaaatgtcatactgttaaatgttaggatg |
59 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
25541071 |
aatattgctctacaaagaaaaatgtcctactgttaaatgttaggatg |
25541117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 25544412 - 25544459
Alignment:
| Q |
283 |
catagacatggagtacatctcttgaaatagattctcagcttcagacaa |
330 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||||| |||||| |
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|
| T |
25544412 |
catagtcatggagtacatctcttgaaactgattctcagctttagacaa |
25544459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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