View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18889_high_6 (Length: 430)
Name: NF18889_high_6
Description: NF18889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18889_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 14 - 412
Target Start/End: Original strand, 5383751 - 5384149
Alignment:
| Q |
14 |
atatctcactatgtagatgtttgtgcacagatttttaaattatagcgttatgacactgttggtgtataattattaaattttcgatataatatgctaattt |
113 |
Q |
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| T |
5383751 |
atatctcactatgtagatgtttgtgcacagatttttaaattacagcgttatgacactgttggtgtataattattaaattttcgatataatatgctaattg |
5383850 |
T |
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| Q |
114 |
ccgaatgctaactgcttcggtatacttgcggttgtttattgaaggttctccgaattctagagggtgatatggtgatggacgcaaattacatttcaactcc |
213 |
Q |
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| T |
5383851 |
ccgaatgctaactgctttggtatacttgcggttgtttattgaaggttctccgaattctagagggtgatatggtgatggacgcaaattacatttcaactcc |
5383950 |
T |
|
| Q |
214 |
aggctatgatgttggaaacaggagcggtcgcctttggtcagagccactgcagaggcagcaccattacagtggtcccctcttagaagattcattggagtca |
313 |
Q |
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| T |
5383951 |
aggctatgatgttggaaacaggagcggtcgcctttggtcagagccactgcagaggcagcaccattgcagtggtcccctcttagaagattcattggagtca |
5384050 |
T |
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| Q |
314 |
tcattcagtggaaatctatctcttgacaagtataaacctgcttcctattgggataggagcagggacaagccaagaagggcatcatgtgaaggtgatact |
412 |
Q |
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| T |
5384051 |
tcattcagtggaaatctatctcttgacaagtataaacctgcttcctattgggataggagcagggacaagccaagaagggcatcatgtgaaggtgatact |
5384149 |
T |
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