View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18889_high_7 (Length: 423)
Name: NF18889_high_7
Description: NF18889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18889_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 5 - 409
Target Start/End: Complemental strand, 9781452 - 9781052
Alignment:
| Q |
5 |
gagtaccaaaccaacatggggtaccaacaactaacaaaaattatagttgcagataggagttaattggccattattacaccaactaccagccaatcataat |
104 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9781452 |
gagtaccaaactaacatggggtaccaacaactaacaaaaattatagttgcagataggagttaattggccattattacaccaactaccagccaatcgtaat |
9781353 |
T |
|
| Q |
105 |
agagcaccctactcaatactcatggtccctagctccttctctgaatataccaattcatatcttatcttattttcgtcttttcnnnnnnnagttagtaatt |
204 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| | |
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| T |
9781352 |
agagcaccctactcaatactcatggtccct----ccttctctgaatataccaattcatatcttatcttattt-cgtcttttctttttttatttagtaact |
9781258 |
T |
|
| Q |
205 |
tgagaatgttgaaaatcacaattttattatcttatcttctatatataaaccaacaaactcactttaa-gctgagcaaataaattaagaaagaaaaatatt |
303 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||| |
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| T |
9781257 |
tgagaatgttgaaaatcacaattttcttatcttatcttctatattgaaaccaacaaactcactttaaagctcagcaaacaaattaacaaagaaaaatatt |
9781158 |
T |
|
| Q |
304 |
tcaaacaaagacatattttaatttctactttgatttttcctttatagaaaacaataggcaggaatgaaggttgcatgtctcgttttggtgttgtgcattg |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9781157 |
ccaaacaaagacatattttaatttctactttgatttttcctttatagaaaacaataggcaggaatgaaggttgcatgtctcgttttggtgttgtgcattg |
9781058 |
T |
|
| Q |
404 |
ttgttg |
409 |
Q |
| |
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|||||| |
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| T |
9781057 |
ttgttg |
9781052 |
T |
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