View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18889_high_9 (Length: 369)
Name: NF18889_high_9
Description: NF18889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18889_high_9 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 230 - 369
Target Start/End: Complemental strand, 4218931 - 4218792
Alignment:
| Q |
230 |
ttaaagaaaaaataaacaaagttgatatgtatgtacattgtattgtgatgctccaaagaaacaatgaattaatacacaccgtaaattttatttcaatctt |
329 |
Q |
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| T |
4218931 |
ttaacgaaaaaataaataaagttattatgtatgtacattgtattgtgaagctccaaagaaacaagaaattaatacacaccgtaaattttatttcaatctt |
4218832 |
T |
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| Q |
330 |
catatataggtataaccatataacatgccacacaccatgt |
369 |
Q |
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| T |
4218831 |
catatataggtataaccatataacatgccacacatcatgt |
4218792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 83 - 223
Target Start/End: Complemental strand, 4219142 - 4218997
Alignment:
| Q |
83 |
agtttatatttaatt-atcttaccaacaaaccaaagtccaaatagtataaatttggattcaatattaagca-nnnnnnnnacaaaaatatc---aatgat |
177 |
Q |
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| T |
4219142 |
agtttatatttaatttatcttaccaacaaaccaatttccaaatagtataaatttggattcaatattaagcatttttttttacaaaaatatcaataatgat |
4219043 |
T |
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| Q |
178 |
gatttaaactccaattatgttgccaatttttatgtcaacgtactcc |
223 |
Q |
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| T |
4219042 |
gatttaaactccaattatgttggcaattattatgtcatagtactcc |
4218997 |
T |
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