View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18889_low_1 (Length: 972)
Name: NF18889_low_1
Description: NF18889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18889_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 486 - 967
Target Start/End: Complemental strand, 37245345 - 37244864
Alignment:
| Q |
486 |
cttgaaatgaattccttttagtccacgtttagtgtctaacaattttttgttcccaccatatctatatgggacttataatttgatgtgatccaggcatgtg |
585 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37245345 |
cttgaaatgaattccttatagtccacgtttagtgtctaacaattttttgttcccaccatatctatatgggacttataatttgatgtgatccaggcatgtg |
37245246 |
T |
|
| Q |
586 |
aattttaaccataaaaagagtgtgtcaaaaagggtatactgtgttgctagcaatccttttgataaaattgaccaactgtgtatatagtttgaataatagt |
685 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37245245 |
aattttaaccataaaaagagtgtgtcgaaaagggtatactgtgttgctagcaatccttttgataaaattgaccaactgtgtatatagtttgaataatagt |
37245146 |
T |
|
| Q |
686 |
aagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggttcctaaaataagtttgaatgagacttgcacgccaacttttccaaggtttt |
785 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37245145 |
aagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggttcctaaaataagtttgaatgagacttgcacgccaacttttccaaggtttt |
37245046 |
T |
|
| Q |
786 |
tcacaatagtacttcatattcgtcatcaccatatcaagttcaccattgcgatccatggagatttctttggccaatgagttgaacaatttggccacaagtt |
885 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37245045 |
tcacaatagtacttcatattcgtcatcaccatatcaagttcaccattgcgatccatggagatttctttggccaatgagttgaacaatttggccacaagtt |
37244946 |
T |
|
| Q |
886 |
tatcgttcccaagagcgttgattaggatcccacttctactaagaaatggaacgtcctgagcagtgtcgatgatgatgtccat |
967 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37244945 |
tatcgttcccaagagcgttgattaggatcccacttctactaagaaatggaacgtcctgagcagtgtcgatgatggtgtccat |
37244864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 424
Target Start/End: Complemental strand, 37245813 - 37245407
Alignment:
| Q |
18 |
caagagaggtgtaaccgtaacagaattaggtccatcactagaataaacatattactatgaggtagtactctgtgaagggtctgtcaaagtagtgccgttg |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37245813 |
caagagaggtgtaaccgtaacagaattaggtccatcactagaataaacatagtactatgaggtagtactctgtgaagggtctgtcaaagtagtgctgttg |
37245714 |
T |
|
| Q |
118 |
ttggcacccgtagaagtagtattgcgtgccatggaaattcaaagaaagcttcaaggtagatgacgaagatcgttgaaaaaagcaagaaacacaaattacg |
217 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37245713 |
ttggcactcgtagaagtagtattgcgtgccatggaaattcaaagaaagcttcaaggtagatgacgaagatcgttgaaaaaagcaagaaacacaaattacg |
37245614 |
T |
|
| Q |
218 |
tgcaattgcagaaaaagaaggaaattgtagagtgaatcaaggagattccaccaaaagttgcagaaaaacgcaagagaaaacaaaagtgtgagccaattca |
317 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37245613 |
tgcaattgcagaaaaagaaggaaattgtagagtgaatcaaggagattccaccaaaagttgcagtaaaacgcaagagaaaacaaaagtgtgagccaattca |
37245514 |
T |
|
| Q |
318 |
cgaaagactcacgataccagggaaattaaaacaccagtacagatacctaatagatagatagctcatataataatgggtacaaatccatagcactggattg |
417 |
Q |
| |
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||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37245513 |
cgaaagactcacgataccatggaaattaaaacaccggtacagatagctaatagatagatagctcatataataatgggtacaaatccatagcactggattg |
37245414 |
T |
|
| Q |
418 |
gagatgc |
424 |
Q |
| |
|
||||||| |
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|
| T |
37245413 |
gagatgc |
37245407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 639 - 921
Target Start/End: Complemental strand, 37283654 - 37283372
Alignment:
| Q |
639 |
tccttttgataaaattgaccaactgtgtatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggttcc |
738 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37283654 |
tccttttgataaaattgaccaactgtgtatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggttcc |
37283555 |
T |
|
| Q |
739 |
taaaataagtttgaatgagacttgcacgccaacttttccaaggtttttcacaatagtacttcatattcgtcatcaccatatcaagttcaccattgcgatc |
838 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| || || | ||| || | ||||| || | ||||| |||||||| || | ||||| |
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| T |
37283554 |
taaaataagtttgaatgagacttgcacgccaacttttccacggcttcttacagtaagaaatcatactctttgtcacctcttcaagttctccttcacgatc |
37283455 |
T |
|
| Q |
839 |
catggagatttctttggccaatgagttgaacaatttggccacaagtttatcgttcccaagagcgttgattaggatcccacttc |
921 |
Q |
| |
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||| | ||||||||| ||||| ||||||||||||||||| ||| ||| || || ||||| |||||||| ||||||||||| |
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| T |
37283454 |
cattgggatttcttttgccaaggagttgaacaatttggcaacagctttgtcactctcaagatagttgattatgatcccacttc |
37283372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 625 - 784
Target Start/End: Complemental strand, 37965871 - 37965712
Alignment:
| Q |
625 |
tgtgttgctagcaatccttttgataaaattgaccaactgtgtatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccat |
724 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| ||| ||||||||||| ||||| ||||||| | ||||| |||| |||| |||||||||||||||| |
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| T |
37965871 |
tgtgttgttagcactccttttgataaaattgacgaaccgtgtatatagtctgaatgatagtaaaactaaaaatgaaggtagcaacaacaagagacaccat |
37965772 |
T |
|
| Q |
725 |
agcccaagggttcctaaaataagtttgaatgagacttgcacgccaacttttccaaggttt |
784 |
Q |
| |
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|||||||||| ||||||||||||| |||||||||| |||||||| |||||||||||||| |
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|
| T |
37965771 |
agcccaagggctcctaaaataagtacgaatgagactagcacgccatcttttccaaggttt |
37965712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 659 - 921
Target Start/End: Complemental strand, 37319381 - 37319119
Alignment:
| Q |
659 |
aactgtgtatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggttcctaaaataagtttgaatgaga |
758 |
Q |
| |
|
||||| ||||| |||||||| |||||| | |||||||||||| | ||||||||||||||| || |||||||| ||||| ||||||||||||||||||||| |
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| T |
37319381 |
aactgagtatacagtttgaacaatagttaaagcaaaaaggaaaatagcagcaacaagagagacaatagcccacgggtttctaaaataagtttgaatgaga |
37319282 |
T |
|
| Q |
759 |
cttgcacgccaacttttccaaggtttttcacaatagtacttcatattcgtcatcaccatatcaagttcaccattgcgatccatggagatttctttggcca |
858 |
Q |
| |
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| |||||||| |||||||| ||||| | || || | ||||| || || |||||| ||||||| | |||| ||||||| | || ||||| | || |
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|
| T |
37319281 |
ttagcacgccatcttttccacggtttcttgcagtaatcactcatactcatcctcaccacatcaagtactccatgacgatccactgttatgtctttagaca |
37319182 |
T |
|
| Q |
859 |
atgagttgaacaatttggccacaagtttatcgttcccaagagcgttgattaggatcccacttc |
921 |
Q |
| |
|
| ||||| |||||||||| |||| ||||||| | |||||||| ||||||| ||||||||||| |
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|
| T |
37319181 |
acgagttaaacaatttggaaacaactttatcgcttccaagagcattgattatgatcccacttc |
37319119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 642 - 769
Target Start/End: Original strand, 16571841 - 16571968
Alignment:
| Q |
642 |
ttttgataaaattgaccaactgtgtatatagtttgaataatagtaagagcaaaaaggaagaaagcagcaacaagagacaccatagcccaagggttcctaa |
741 |
Q |
| |
|
|||||||||||||| ||| || ||| |||||||||| |||||||||||||||| |||| ||||||||||| |||||||||| |||||||||||||| |
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| T |
16571841 |
ttttgataaaattgggcaattgagtaaccagtttgaatactagtaagagcaaaaagaaagatggcagcaacaagtgacaccatagaccaagggttcctaa |
16571940 |
T |
|
| Q |
742 |
aataagtttgaatgagacttgcacgcca |
769 |
Q |
| |
|
||||||| ||| ||||| | |||||||| |
|
|
| T |
16571941 |
aataagtgtgagtgagattggcacgcca |
16571968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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