View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18889_low_14 (Length: 309)
Name: NF18889_low_14
Description: NF18889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18889_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 37337526 - 37337818
Alignment:
| Q |
1 |
aaatgttaaacagggccctaatgtcatttgttatgtttaaactagaaattttatcttggaaatgatgggctttgaaactttagaaattgactttttctac |
100 |
Q |
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| T |
37337526 |
aaatgttaaacagggccctaatgacatttgttatgtttaaactagaaattttatcttggaaatgatgggctttgaaactttagaaattgactttttctac |
37337625 |
T |
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| Q |
101 |
ttaaaacttcctttttaagcttcttaacaagtgcccttatagaatttgttagcacgaccctttcttattattattacaattgtttcagataaagatggat |
200 |
Q |
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| T |
37337626 |
ttaaaacttcctttttaagcttcttaacaagtgcccttacggaatttgttagcacgaccctttcttattattattacaattgtttcagataaagatggat |
37337725 |
T |
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| Q |
201 |
gagaatggagaaaatcctagtaatattgcaagtactgattttaactttgccttattatcaattagcagtgatgatgatgaagggtgtgataaa |
293 |
Q |
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| T |
37337726 |
gagaatggagaaaatcctagtaatattgcaagtactgattttaactttgccttattatcaattagtagtgatgatgatgaagggtgtgataaa |
37337818 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 46056406 - 46056454
Alignment:
| Q |
178 |
aattgtttcagataaagatggatgagaatggagaaaatcctagtaatat |
226 |
Q |
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| T |
46056406 |
aattgttttagataaaggtggatgagaatggagcaagtccgagtaatat |
46056454 |
T |
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