View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18889_low_16 (Length: 265)
Name: NF18889_low_16
Description: NF18889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18889_low_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 84 - 260
Target Start/End: Complemental strand, 22192386 - 22192210
Alignment:
| Q |
84 |
aataatttctgcaaatggcttgaatttgatgtcagactttgggacatcatgaacattgatgtcatcagcagtagtgccaccgatccatttcgataaaaac |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22192386 |
aataatttctgcaaatggcttgaatttgatgtcagactttgggacatcatgaacattgatgtcatcagcagtagtgccaccgatccatttcaataaaaac |
22192287 |
T |
|
| Q |
184 |
ttatgttctgaagccttgaacactaaatcattgctaacaacttgaaagttgctcaaagagtatgcagcatattcttc |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
22192286 |
ttatgttctgaagccttgaacactaaatcattgctaacaacttgaaagttgctcaaagagtatgtagcattttcttc |
22192210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22192429 - 22192387
Alignment:
| Q |
1 |
atttcaatataaaatggaaatgtatataagttataagcagtat |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22192429 |
atttcaatataaaatggaaatgtatataagttataagcagtat |
22192387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 44 - 235
Target Start/End: Complemental strand, 26410057 - 26409866
Alignment:
| Q |
44 |
tgaactcactaactaatacatcaggtcgccatttccctgaaataatttctgcaaatggcttgaatttgatgtcagactttgggacatcatgaacattgat |
143 |
Q |
| |
|
|||||||||||||||| | ||||||| |||||| || || |||||||| ||||| |||||||||||| ||||||| | || ||||||||||||||||| |
|
|
| T |
26410057 |
tgaactcactaactaaaatatcaggtttccattttccagatataatttcagcaaacggcttgaatttggtgtcagattgaggaacatcatgaacattgat |
26409958 |
T |
|
| Q |
144 |
gtcatcagcagtagtgccaccgatccatttcgataaaaacttatgttctgaagccttgaacactaaatcattgctaacaacttgaaagttgc |
235 |
Q |
| |
|
||| ||||||||||| |||||| |||||||| | | ||||||||||||||| || ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26409957 |
gtcttcagcagtagtcccaccggtccatttcaaaagaaacttatgttctgaggctttgaacactaaatcattgctaaccacttgaaagttgc |
26409866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 44 - 235
Target Start/End: Original strand, 27134060 - 27134251
Alignment:
| Q |
44 |
tgaactcactaactaatacatcaggtcgccatttccctgaaataatttctgcaaatggcttgaatttgatgtcagactttgggacatcatgaacattgat |
143 |
Q |
| |
|
|||||||||||||||| | ||||||| |||||| || || |||||||| ||||| |||||||||||| ||||||| | || ||||||||||||||||| |
|
|
| T |
27134060 |
tgaactcactaactaaaatatcaggtttccattttccagatataatttcagcaaacggcttgaatttggtgtcagattgaggaacatcatgaacattgat |
27134159 |
T |
|
| Q |
144 |
gtcatcagcagtagtgccaccgatccatttcgataaaaacttatgttctgaagccttgaacactaaatcattgctaacaacttgaaagttgc |
235 |
Q |
| |
|
||| ||||||||||| |||||| | |||||| | | ||||||||||||| | || ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27134160 |
gtcttcagcagtagtcccaccggttcatttcaaaagaaacttatgttctaaggctttgaacactaaatcattgctaaccacttgaaagttgc |
27134251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 209
Target Start/End: Original strand, 21661189 - 21661345
Alignment:
| Q |
53 |
taactaatacatcaggtcgccatttccctgaaataatttctgcaaatggcttgaatttgatgtcagactttgggacatcatgaacattgatgtcatcagc |
152 |
Q |
| |
|
||||||| | |||||||||||||||||| ||||||||||| ||||| |||||||||||| | ||||| | || | |||||||||||||||||| |||| |
|
|
| T |
21661189 |
taactaaaatatcaggtcgccatttcccagaaataatttcagcaaagggcttgaatttggtttcagagataggaatttcatgaacattgatgtcaacagc |
21661288 |
T |
|
| Q |
153 |
agtagtgccaccgatccatttcgataaaaacttatgttctgaagccttgaacactaa |
209 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
21661289 |
agtagttccaccagtccatttcagcaaaaacttatgctctgaagctttgaacactaa |
21661345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University