View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18889_low_18 (Length: 250)
Name: NF18889_low_18
Description: NF18889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18889_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 186
Target Start/End: Original strand, 4218485 - 4218657
Alignment:
| Q |
13 |
aatattgatctccaatataccccagctgaaagtggtaaaccctaataaagctcaaagccttccgtgataagagattttgggccatgcatggtttgtgact |
112 |
Q |
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| T |
4218485 |
aatattgatctccaatataccccagctgaaagtggtaaaccctaataaagctcaaagccttccgtgttaagagattttgggccatgcatggtttgtgact |
4218584 |
T |
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| Q |
113 |
ttgtgtgttagtattgatatttatatatctatttgcctctatatgtatcagtttgtgagagtgtgtgaagaaag |
186 |
Q |
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| T |
4218585 |
ttgtgtgttagt-ttgatatttatatatctatttgcatctatatgtatcattttgtgtgagtgagtgaagaaag |
4218657 |
T |
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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 4218702 - 4218745
Alignment:
| Q |
192 |
tgagctacaaaaatttatatatagctaattaaatcttgataggcc |
236 |
Q |
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| T |
4218702 |
tgagctataaaaaattatatatagctaa-taaatcttgataggcc |
4218745 |
T |
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